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Knocking down the obstacles to functional genomics data sharing
This week, Scientific Data published a collection of eight papers that describe datasets from high-throughput functional genomics screens, primarily utilizing RNA interference (RNAi). The publications explore host-pathogen dependencies, innate immune response, disease pathways, and cell morphology a...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5332007/ https://www.ncbi.nlm.nih.gov/pubmed/28248922 http://dx.doi.org/10.1038/sdata.2017.19 |
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author | Simpson, Kaylene J. Smith, Jennifer A. |
author_facet | Simpson, Kaylene J. Smith, Jennifer A. |
author_sort | Simpson, Kaylene J. |
collection | PubMed |
description | This week, Scientific Data published a collection of eight papers that describe datasets from high-throughput functional genomics screens, primarily utilizing RNA interference (RNAi). The publications explore host-pathogen dependencies, innate immune response, disease pathways, and cell morphology and motility at the genome-level. All data, including raw images from the high content screens, are publically available in PubChem BioAssay, figshare, Harvard Dataverse or the Image Data Resource (IDR). Detailed data descriptors enable use of these data for analysis algorithm design, machine learning, data comparisons, as well as generating new scientific hypotheses. |
format | Online Article Text |
id | pubmed-5332007 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-53320072017-03-03 Knocking down the obstacles to functional genomics data sharing Simpson, Kaylene J. Smith, Jennifer A. Sci Data Comment This week, Scientific Data published a collection of eight papers that describe datasets from high-throughput functional genomics screens, primarily utilizing RNA interference (RNAi). The publications explore host-pathogen dependencies, innate immune response, disease pathways, and cell morphology and motility at the genome-level. All data, including raw images from the high content screens, are publically available in PubChem BioAssay, figshare, Harvard Dataverse or the Image Data Resource (IDR). Detailed data descriptors enable use of these data for analysis algorithm design, machine learning, data comparisons, as well as generating new scientific hypotheses. Nature Publishing Group 2017-03-01 /pmc/articles/PMC5332007/ /pubmed/28248922 http://dx.doi.org/10.1038/sdata.2017.19 Text en Copyright © 2017, The Author(s) http://creativecommons.org/licenses/by/4.0 This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0 |
spellingShingle | Comment Simpson, Kaylene J. Smith, Jennifer A. Knocking down the obstacles to functional genomics data sharing |
title | Knocking down the obstacles to functional genomics data sharing |
title_full | Knocking down the obstacles to functional genomics data sharing |
title_fullStr | Knocking down the obstacles to functional genomics data sharing |
title_full_unstemmed | Knocking down the obstacles to functional genomics data sharing |
title_short | Knocking down the obstacles to functional genomics data sharing |
title_sort | knocking down the obstacles to functional genomics data sharing |
topic | Comment |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5332007/ https://www.ncbi.nlm.nih.gov/pubmed/28248922 http://dx.doi.org/10.1038/sdata.2017.19 |
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