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Knocking down the obstacles to functional genomics data sharing

This week, Scientific Data published a collection of eight papers that describe datasets from high-throughput functional genomics screens, primarily utilizing RNA interference (RNAi). The publications explore host-pathogen dependencies, innate immune response, disease pathways, and cell morphology a...

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Detalles Bibliográficos
Autores principales: Simpson, Kaylene J., Smith, Jennifer A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5332007/
https://www.ncbi.nlm.nih.gov/pubmed/28248922
http://dx.doi.org/10.1038/sdata.2017.19
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author Simpson, Kaylene J.
Smith, Jennifer A.
author_facet Simpson, Kaylene J.
Smith, Jennifer A.
author_sort Simpson, Kaylene J.
collection PubMed
description This week, Scientific Data published a collection of eight papers that describe datasets from high-throughput functional genomics screens, primarily utilizing RNA interference (RNAi). The publications explore host-pathogen dependencies, innate immune response, disease pathways, and cell morphology and motility at the genome-level. All data, including raw images from the high content screens, are publically available in PubChem BioAssay, figshare, Harvard Dataverse or the Image Data Resource (IDR). Detailed data descriptors enable use of these data for analysis algorithm design, machine learning, data comparisons, as well as generating new scientific hypotheses.
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spelling pubmed-53320072017-03-03 Knocking down the obstacles to functional genomics data sharing Simpson, Kaylene J. Smith, Jennifer A. Sci Data Comment This week, Scientific Data published a collection of eight papers that describe datasets from high-throughput functional genomics screens, primarily utilizing RNA interference (RNAi). The publications explore host-pathogen dependencies, innate immune response, disease pathways, and cell morphology and motility at the genome-level. All data, including raw images from the high content screens, are publically available in PubChem BioAssay, figshare, Harvard Dataverse or the Image Data Resource (IDR). Detailed data descriptors enable use of these data for analysis algorithm design, machine learning, data comparisons, as well as generating new scientific hypotheses. Nature Publishing Group 2017-03-01 /pmc/articles/PMC5332007/ /pubmed/28248922 http://dx.doi.org/10.1038/sdata.2017.19 Text en Copyright © 2017, The Author(s) http://creativecommons.org/licenses/by/4.0 This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0
spellingShingle Comment
Simpson, Kaylene J.
Smith, Jennifer A.
Knocking down the obstacles to functional genomics data sharing
title Knocking down the obstacles to functional genomics data sharing
title_full Knocking down the obstacles to functional genomics data sharing
title_fullStr Knocking down the obstacles to functional genomics data sharing
title_full_unstemmed Knocking down the obstacles to functional genomics data sharing
title_short Knocking down the obstacles to functional genomics data sharing
title_sort knocking down the obstacles to functional genomics data sharing
topic Comment
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5332007/
https://www.ncbi.nlm.nih.gov/pubmed/28248922
http://dx.doi.org/10.1038/sdata.2017.19
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