Cargando…

Detection of statistically significant network changes in complex biological networks

BACKGROUND: Biological networks contribute effectively to unveil the complex structure of molecular interactions and to discover driver genes especially in cancer context. It can happen that due to gene mutations, as for example when cancer progresses, the gene expression network undergoes some amou...

Descripción completa

Detalles Bibliográficos
Autores principales:	Mall, Raghvendra, Cerulo, Luigi, Bensmail, Halima, Iavarone, Antonio, Ceccarelli, Michele
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2017
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5336651/ https://www.ncbi.nlm.nih.gov/pubmed/28259158 http://dx.doi.org/10.1186/s12918-017-0412-6

Ejemplares similares

RGBM: regularized gradient boosting machines for identification of the transcriptional regulators of discrete glioma subtypes
por: Mall, Raghvendra, et al.
Publicado: (2018)

AI-driven drug repurposing and binding pose meta dynamics identifies novel targets for monkeypox virus
por: Patel, Chirag N., et al.
Publicado: (2023)

Systems biology analysis of gene expression data and gene network reverse-engineering approaches reveal NFAT5 as a candidate biomarker in Inflammatory Breast Cancer
por: Remo, Andrea, et al.
Publicado: (2015)

MOViDA: multiomics visible drug activity prediction with a biologically informed neural network model
por: Ferraro, Luigi, et al.
Publicado: (2023)

Knowledge-fused differential dependency network models for detecting significant rewiring in biological networks
por: Tian, Ye, et al.
Publicado: (2014)

Efficient Feature Selection and Multiclass Classification with Integrated Instance and Model Based Learning
por: Liu, Zhenqiu, et al.
Publicado: (2012)

Learning gene regulatory networks from only positive and unlabeled data
por: Cerulo, Luigi, et al.
Publicado: (2010)

VEGAWES: variational segmentation on whole exome sequencing for copy number detection
por: Anjum, Samreen, et al.
Publicado: (2015)

Pancancer network analysis reveals key master regulators for cancer invasiveness
por: Jethalia, Mahesh, et al.
Publicado: (2023)

A statistical network pre-processing method to improve relevance and significance of gene lists in microarray gene expression studies
por: Agapito, Giuseppe, et al.
Publicado: (2022)

Harnessing Qatar Biobank to understand type 2 diabetes and obesity in adult Qataris from the First Qatar Biobank Project
por: Ullah, Ehsan, et al.
Publicado: (2018)

Correction to: Harnessing Qatar Biobank to understand type 2 diabetes and obesity in adult Qataris from the First Qatar Biobank Project
por: Ullah, Ehsan, et al.
Publicado: (2018)

Simple risk score to screen for prediabetes: A cross‐sectional study from the Qatar Biobank cohort
por: Abbas, Mostafa, et al.
Publicado: (2020)

Systems biology analysis reveals NFAT5 as a novel biomarker and master regulator of inflammatory breast cancer
por: Remo, Andrea, et al.
Publicado: (2015)

On detection and assessment of statistical significance of Genomic Islands
por: Chatterjee, Raghunath, et al.
Publicado: (2008)

Inference of complex biological networks: distinguishability issues and optimization-based solutions
por: Szederkényi, Gábor, et al.
Publicado: (2011)

Multiple graph regularized protein domain ranking
por: Wang, Jim Jing-Yan, et al.
Publicado: (2012)

COUSCOus: improved protein contact prediction using an empirical Bayes covariance estimator
por: Rawi, Reda, et al.
Publicado: (2016)

Machine learning prediction of oncology drug targets based on protein and network properties
por: Dezső, Zoltán, et al.
Publicado: (2020)

A powerful score-based statistical test for group difference in weighted biological networks
por: Ji, Jiadong, et al.
Publicado: (2016)

A sample size planning approach that considers both statistical significance and clinical significance
por: Jia, Bin, et al.
Publicado: (2015)

Multilevel Hierarchical Kernel Spectral Clustering for Real-Life Large Scale Complex Networks
por: Mall, Raghvendra, et al.
Publicado: (2014)

Visualizing statistical significance of disease clusters using cartograms
por: Kronenfeld, Barry J., et al.
Publicado: (2017)

Unravelling personalized dysfunctional gene network of complex diseases based on differential network model
por: Yu, Xiangtian, et al.
Publicado: (2015)

A New Method for Motif Mining in Biological Networks
por: Xu, Yuan, et al.
Publicado: (2014)

TimeDelay-ARACNE: Reverse engineering of gene networks from time-course data by an information theoretic approach
por: Zoppoli, Pietro, et al.
Publicado: (2010)

Statistical significance of quantitative PCR
por: Karlen, Yann, et al.
Publicado: (2007)

ATria: a novel centrality algorithm applied to biological networks
por: Cickovski, Trevor, et al.
Publicado: (2017)

Significant distinct branches of hierarchical trees: a framework for statistical analysis and applications to biological data
por: Sun, Guoli, et al.
Publicado: (2014)

Comparison and assessment of family- and population-based genotype imputation methods in large pedigrees
por: Ullah, Ehsan, et al.
Publicado: (2019)

Structurally robust biological networks
por: Blanchini, Franco, et al.
Publicado: (2011)

Development and implementation of an algorithm for detection of protein complexes in large interaction networks
por: Altaf-Ul-Amin, Md, et al.
Publicado: (2006)

Statistical significance of cis-regulatory modules
por: Schones, Dustin E, et al.
Publicado: (2007)

Assessing statistical significance in causal graphs
por: Chindelevitch, Leonid, et al.
Publicado: (2012)

A model-based statistic for detecting molecular markers associated with complex survival patterns in early-stage cancer
por: Broët, Philippe, et al.
Publicado: (2012)

Network construction and structure detection with metagenomic count data
por: Liu, Zhenqiu, et al.
Publicado: (2015)

Qualitative networks: a symbolic approach to analyze biological signaling networks
por: Schaub, Marc A, et al.
Publicado: (2007)

A core-attachment based method to detect protein complexes in PPI networks
por: Wu, Min, et al.
Publicado: (2009)

Statistical inference of the time-varying structure of gene-regulation networks
por: Lèbre, Sophie, et al.
Publicado: (2010)

Netgram: Visualizing Communities in Evolving Networks
por: Mall, Raghvendra, et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_0csbqhkqc4ukvio3h7ltmvfnli