Metagenome analysis of the root endophytic microbial community of Indian rice (O. sativa L.)

This study reports the root endophytic microbial community profile in rice (Oryza sativa L.), the largest food crop of Asia, using 16S rRNA gene amplicon sequencing. Metagenome of OS01 and OS04 consisted of 11,17,900 sequences with 300 Mbp size and average 55.6% G + C content. Data of this study are...

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Detalles Bibliográficos
Autores principales: Sengupta, Subhadipa, Ganguli, Sayak, Singh, Pankaj K
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2017
Materias:
Lab Resource
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5339402/
https://www.ncbi.nlm.nih.gov/pubmed/28289604
http://dx.doi.org/10.1016/j.gdata.2017.02.010
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author Sengupta, Subhadipa
Ganguli, Sayak
Singh, Pankaj K
author_facet Sengupta, Subhadipa
Ganguli, Sayak
Singh, Pankaj K
author_sort Sengupta, Subhadipa
collection PubMed
description This study reports the root endophytic microbial community profile in rice (Oryza sativa L.), the largest food crop of Asia, using 16S rRNA gene amplicon sequencing. Metagenome of OS01 and OS04 consisted of 11,17,900 sequences with 300 Mbp size and average 55.6% G + C content. Data of this study are available at NCBI Bioproject (PRJNA360379). The taxonomic analysis of 843 OTU's showed that the sequences belonged to four major phyla revealing dominance of Proteobacteria, Firmicutes, Cyanobacteria and Actinobacteria. Results reveal the dominance of Bacillus as major endophytic genera in rice roots, probably playing a key role in Nitrogen fixation.
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spelling pubmed-53394022017-03-13 Metagenome analysis of the root endophytic microbial community of Indian rice (O. sativa L.) Sengupta, Subhadipa Ganguli, Sayak Singh, Pankaj K Genom Data Lab Resource This study reports the root endophytic microbial community profile in rice (Oryza sativa L.), the largest food crop of Asia, using 16S rRNA gene amplicon sequencing. Metagenome of OS01 and OS04 consisted of 11,17,900 sequences with 300 Mbp size and average 55.6% G + C content. Data of this study are available at NCBI Bioproject (PRJNA360379). The taxonomic analysis of 843 OTU's showed that the sequences belonged to four major phyla revealing dominance of Proteobacteria, Firmicutes, Cyanobacteria and Actinobacteria. Results reveal the dominance of Bacillus as major endophytic genera in rice roots, probably playing a key role in Nitrogen fixation. Elsevier 2017-02-28 /pmc/articles/PMC5339402/ /pubmed/28289604 http://dx.doi.org/10.1016/j.gdata.2017.02.010 Text en © 2017 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Lab Resource
Sengupta, Subhadipa
Ganguli, Sayak
Singh, Pankaj K
Metagenome analysis of the root endophytic microbial community of Indian rice (O. sativa L.)
title Metagenome analysis of the root endophytic microbial community of Indian rice (O. sativa L.)
title_full Metagenome analysis of the root endophytic microbial community of Indian rice (O. sativa L.)
title_fullStr Metagenome analysis of the root endophytic microbial community of Indian rice (O. sativa L.)
title_full_unstemmed Metagenome analysis of the root endophytic microbial community of Indian rice (O. sativa L.)
title_short Metagenome analysis of the root endophytic microbial community of Indian rice (O. sativa L.)
title_sort metagenome analysis of the root endophytic microbial community of indian rice (o. sativa l.)
topic Lab Resource
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5339402/
https://www.ncbi.nlm.nih.gov/pubmed/28289604
http://dx.doi.org/10.1016/j.gdata.2017.02.010
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