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To address surface reaction network complexity using scaling relations machine learning and DFT calculations
Surface reaction networks involving hydrocarbons exhibit enormous complexity with thousands of species and reactions for all but the very simplest of chemistries. We present a framework for optimization under uncertainty for heterogeneous catalysis reaction networks using surrogate models that are t...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5343483/ https://www.ncbi.nlm.nih.gov/pubmed/28262694 http://dx.doi.org/10.1038/ncomms14621 |
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author | Ulissi, Zachary W. Medford, Andrew J. Bligaard, Thomas Nørskov, Jens K. |
author_facet | Ulissi, Zachary W. Medford, Andrew J. Bligaard, Thomas Nørskov, Jens K. |
author_sort | Ulissi, Zachary W. |
collection | PubMed |
description | Surface reaction networks involving hydrocarbons exhibit enormous complexity with thousands of species and reactions for all but the very simplest of chemistries. We present a framework for optimization under uncertainty for heterogeneous catalysis reaction networks using surrogate models that are trained on the fly. The surrogate model is constructed by teaching a Gaussian process adsorption energies based on group additivity fingerprints, combined with transition-state scaling relations and a simple classifier for determining the rate-limiting step. The surrogate model is iteratively used to predict the most important reaction step to be calculated explicitly with computationally demanding electronic structure theory. Applying these methods to the reaction of syngas on rhodium(111), we identify the most likely reaction mechanism. Propagating uncertainty throughout this process yields the likelihood that the final mechanism is complete given measurements on only a subset of the entire network and uncertainty in the underlying density functional theory calculations. |
format | Online Article Text |
id | pubmed-5343483 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-53434832017-03-17 To address surface reaction network complexity using scaling relations machine learning and DFT calculations Ulissi, Zachary W. Medford, Andrew J. Bligaard, Thomas Nørskov, Jens K. Nat Commun Article Surface reaction networks involving hydrocarbons exhibit enormous complexity with thousands of species and reactions for all but the very simplest of chemistries. We present a framework for optimization under uncertainty for heterogeneous catalysis reaction networks using surrogate models that are trained on the fly. The surrogate model is constructed by teaching a Gaussian process adsorption energies based on group additivity fingerprints, combined with transition-state scaling relations and a simple classifier for determining the rate-limiting step. The surrogate model is iteratively used to predict the most important reaction step to be calculated explicitly with computationally demanding electronic structure theory. Applying these methods to the reaction of syngas on rhodium(111), we identify the most likely reaction mechanism. Propagating uncertainty throughout this process yields the likelihood that the final mechanism is complete given measurements on only a subset of the entire network and uncertainty in the underlying density functional theory calculations. Nature Publishing Group 2017-03-06 /pmc/articles/PMC5343483/ /pubmed/28262694 http://dx.doi.org/10.1038/ncomms14621 Text en Copyright © 2017, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Ulissi, Zachary W. Medford, Andrew J. Bligaard, Thomas Nørskov, Jens K. To address surface reaction network complexity using scaling relations machine learning and DFT calculations |
title | To address surface reaction network complexity using scaling relations machine learning and DFT calculations |
title_full | To address surface reaction network complexity using scaling relations machine learning and DFT calculations |
title_fullStr | To address surface reaction network complexity using scaling relations machine learning and DFT calculations |
title_full_unstemmed | To address surface reaction network complexity using scaling relations machine learning and DFT calculations |
title_short | To address surface reaction network complexity using scaling relations machine learning and DFT calculations |
title_sort | to address surface reaction network complexity using scaling relations machine learning and dft calculations |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5343483/ https://www.ncbi.nlm.nih.gov/pubmed/28262694 http://dx.doi.org/10.1038/ncomms14621 |
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