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Efficient string similarity join in multi-core and distributed systems
In big data area a significant challenge about string similarity join is to find all similar pairs more efficiently. In this paper, we propose a parallel processing framework for efficient string similarity join. First, the input is split into some disjoint small subsets according to the joint frequ...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5344375/ https://www.ncbi.nlm.nih.gov/pubmed/28278177 http://dx.doi.org/10.1371/journal.pone.0172526 |
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author | Yan, Cairong Zhao, Xue Zhang, Qinglong Huang, Yongfeng |
author_facet | Yan, Cairong Zhao, Xue Zhang, Qinglong Huang, Yongfeng |
author_sort | Yan, Cairong |
collection | PubMed |
description | In big data area a significant challenge about string similarity join is to find all similar pairs more efficiently. In this paper, we propose a parallel processing framework for efficient string similarity join. First, the input is split into some disjoint small subsets according to the joint frequency distribution and the interval distribution of strings. Then the filter-verification strategy is adopted in the computation of string similarity for each subset so that the number of candidate pairs is reduced before an effective pruning strategy is used to improve the performance. Finally, the operation of string join is executed in parallel. Para-Join algorithm based on the multi-threading technique is proposed to implement the framework in a multi-core system while Pada-Join algorithm based on Spark platform is proposed to implement the framework in a cluster system. We prove that Para-Join and Pada-Join cannot only avoid reduplicate computation but also ensure the completeness of the result. Experimental results show that Para-Join can achieve high efficiency and significantly outperform than state-of-the-art approaches, meanwhile, Pada-Join can work on large datasets. |
format | Online Article Text |
id | pubmed-5344375 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-53443752017-03-29 Efficient string similarity join in multi-core and distributed systems Yan, Cairong Zhao, Xue Zhang, Qinglong Huang, Yongfeng PLoS One Research Article In big data area a significant challenge about string similarity join is to find all similar pairs more efficiently. In this paper, we propose a parallel processing framework for efficient string similarity join. First, the input is split into some disjoint small subsets according to the joint frequency distribution and the interval distribution of strings. Then the filter-verification strategy is adopted in the computation of string similarity for each subset so that the number of candidate pairs is reduced before an effective pruning strategy is used to improve the performance. Finally, the operation of string join is executed in parallel. Para-Join algorithm based on the multi-threading technique is proposed to implement the framework in a multi-core system while Pada-Join algorithm based on Spark platform is proposed to implement the framework in a cluster system. We prove that Para-Join and Pada-Join cannot only avoid reduplicate computation but also ensure the completeness of the result. Experimental results show that Para-Join can achieve high efficiency and significantly outperform than state-of-the-art approaches, meanwhile, Pada-Join can work on large datasets. Public Library of Science 2017-03-09 /pmc/articles/PMC5344375/ /pubmed/28278177 http://dx.doi.org/10.1371/journal.pone.0172526 Text en © 2017 Yan et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Yan, Cairong Zhao, Xue Zhang, Qinglong Huang, Yongfeng Efficient string similarity join in multi-core and distributed systems |
title | Efficient string similarity join in multi-core and distributed systems |
title_full | Efficient string similarity join in multi-core and distributed systems |
title_fullStr | Efficient string similarity join in multi-core and distributed systems |
title_full_unstemmed | Efficient string similarity join in multi-core and distributed systems |
title_short | Efficient string similarity join in multi-core and distributed systems |
title_sort | efficient string similarity join in multi-core and distributed systems |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5344375/ https://www.ncbi.nlm.nih.gov/pubmed/28278177 http://dx.doi.org/10.1371/journal.pone.0172526 |
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