Cargando…

Adapting Genotyping-by-Sequencing for Rice F2 Populations

Rapid and cost-effective genotyping of large mapping populations can be achieved by sequencing a reduced representation of the genome of every individual in a given population, and using that information to generate genetic markers. A customized genotyping-by-sequencing (GBS) pipeline was developed...

Descripción completa

Detalles Bibliográficos
Autores principales:	Furuta, Tomoyuki, Ashikari, Motoyuki, Jena, Kshirod K., Doi, Kazuyuki, Reuscher, Stefan
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Genetics Society of America 2017
Materias:	Investigations
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5345719/ https://www.ncbi.nlm.nih.gov/pubmed/28082325 http://dx.doi.org/10.1534/g3.116.038190

Ejemplares similares

Assembling the genome of the African wild rice Oryza longistaminata by exploiting synteny in closely related Oryza species
por: Reuscher, Stefan, et al.
Publicado: (2018)

GBScleanR: robust genotyping error correction using a hidden Markov model with error pattern recognition
por: Furuta, Tomoyuki, et al.
Publicado: (2023)

Convergent Loss of Awn in Two Cultivated Rice Species Oryza sativa and Oryza glaberrima Is Caused by Mutations in Different Loci
por: Furuta, Tomoyuki, et al.
Publicado: (2015)

SNORKEL Genes Relating to Flood Tolerance Were Pseudogenized in Normal Cultivated Rice
por: Nagai, Keisuke, et al.
Publicado: (2022)

Development and validation of allele-specific SNP/indel markers for eight yield-enhancing genes using whole-genome sequencing strategy to increase yield potential of rice, Oryza sativa L.
por: Kim, Sung-Ryul, et al.
Publicado: (2016)

Introgression of a functional epigenetic OsSPL14(WFP) allele into elite indica rice genomes greatly improved panicle traits and grain yield
por: Kim, Sung-Ryul, et al.
Publicado: (2018)

Molecular mechanism of internode elongation in rice
por: Nagai, Keisuke, et al.
Publicado: (2023)

Construction of rice chromosome segment substitution lines harboring Oryza barthii genome and evaluation of yield-related traits
por: Bessho-Uehara, Kanako, et al.
Publicado: (2017)

Marker-Assisted Introgression and Stacking of Major QTLs Controlling Grain Number (Gn1a) and Number of Primary Branching (WFP) to NERICA Cultivars
por: Reyes, Vincent P., et al.
Publicado: (2021)

Marker Density and Read Depth for Genotyping Populations Using Genotyping-by-Sequencing
por: Beissinger, Timothy M., et al.
Publicado: (2013)

Genotype Calling from Population-Genomic Sequencing Data
por: Maruki, Takahiro, et al.
Publicado: (2017)

Utilization of Genotyping-by-Sequencing (GBS) for Rice Pre-Breeding and Improvement: A Review
por: Reyes, Vincent Pamugas, et al.
Publicado: (2022)

Application of Population Sequencing (POPSEQ) for Ordering and Imputing Genotyping-by-Sequencing Markers in Hexaploid Wheat
por: Edae, Erena A., et al.
Publicado: (2015)

Development and evaluation of chromosome segment substitution lines (CSSLs) carrying chromosome segments derived from Oryza rufipogon in the genetic background of Oryza sativa L.
por: Furuta, Tomoyuki, et al.
Publicado: (2014)

Medaka Population Genome Structure and Demographic History Described via Genotyping-by-Sequencing
por: Katsumura, Takafumi, et al.
Publicado: (2018)

GWAS for Meat and Carcass Traits Using Imputed Sequence Level Genotypes in Pooled F2-Designs in Pigs
por: Falker-Gieske, Clemens, et al.
Publicado: (2019)

Mapping causal genes and genetic interactions for agronomic traits using a large F(2) population in rice
por: Feng, Laibao, et al.
Publicado: (2021)

Designing rice panicle architecture via developmental regulatory genes
por: Agata, Ayumi, et al.
Publicado: (2023)

Can the Wild Perennial, Rhizomatous Rice Species Oryza longistaminata be a Candidate for De Novo Domestication?
por: Tong, Shuai, et al.
Publicado: (2023)

Duplication and Loss of Function of Genes Encoding RNA Polymerase III Subunit C4 Causes Hybrid Incompatibility in Rice
por: Nguyen, Giao Ngoc, et al.
Publicado: (2017)

Development of chromosome segment substitution lines harboring Oryza nivara genomic segments in Koshihikari and evaluation of yield-related traits
por: Furuta, Tomoyuki, et al.
Publicado: (2016)

Correlations of Genotype with Climate Parameters Suggest Caenorhabditis elegans Niche Adaptations
por: Evans, Kathryn S., et al.
Publicado: (2016)

Increasing Genome Sampling and Improving SNP Genotyping for Genotyping-by-Sequencing with New Combinations of Restriction Enzymes
por: Fu, Yong-Bi, et al.
Publicado: (2016)

Haplotag: Software for Haplotype-Based Genotyping-by-Sequencing Analysis
por: Tinker, Nicholas A., et al.
Publicado: (2016)

Genotyping-by-sequencing and genomic selection applications in hexaploid triticale
por: Ayalew, Habtamu, et al.
Publicado: (2021)

Genotyping of Endosperms to Determine Seed Dormancy Genes Regulating Germination Through Embryonic, Endospermic, or Maternal Tissues in Rice
por: Gu, Xing-You, et al.
Publicado: (2014)

Understanding population structure in an evolutionary context: population-specific F(ST) and pairwise F(ST)
por: Kitada, Shuichi, et al.
Publicado: (2021)

Exclusion and Genomic Relatedness Methods for Assignment of Parentage Using Genotyping-by-Sequencing Data
por: Dodds, Ken G., et al.
Publicado: (2019)

Integrating Molecular Markers and Environmental Covariates To Interpret Genotype by Environment Interaction in Rice (Oryza sativa L.) Grown in Subtropical Areas
por: Monteverde, Eliana, et al.
Publicado: (2019)

Genotyping by Sequencing in Almond: SNP Discovery, Linkage Mapping, and Marker Design
por: Goonetilleke, Shashi N., et al.
Publicado: (2017)

Inversion Genotyping in the Anopheles gambiae Complex Using High-Throughput Array and Sequencing Platforms
por: Love, R. Rebecca, et al.
Publicado: (2020)

Analysis of genotype-by-environment interactions in a maize mapping population
por: Hudson, Asher I, et al.
Publicado: (2022)

SSD1, which encodes a plant-specific novel protein, controls plant elongation by regulating cell division in rice
por: Asano, Kenji, et al.
Publicado: (2010)

Association between QTLs and morphological traits toward sheath blight resistance in rice (Oryza sativa L.)
por: Hossain, Md Kamal, et al.
Publicado: (2016)

Stacks: Building and Genotyping Loci De Novo From Short-Read Sequences
por: Catchen, Julian M., et al.
Publicado: (2011)

Impact of early genomic prediction for recurrent selection in an upland rice synthetic population
por: Baertschi, Cédric, et al.
Publicado: (2021)

Predicting Adaptive Phenotypes From Multilocus Genotypes in Sitka Spruce (Picea sitchensis) Using Random Forest
por: Holliday, Jason A., et al.
Publicado: (2012)

Extending the Genotype in Brachypodium by Including DNA Methylation Reveals a Joint Contribution with Genetics on Adaptive Traits
por: Eichten, Steven R., et al.
Publicado: (2020)

eQTLs Regulating Transcript Variations Associated with Rapid Internode Elongation in Deepwater Rice
por: Kuroha, Takeshi, et al.
Publicado: (2017)

Genome Assembly Improvement and Mapping Convergently Evolved Skeletal Traits in Sticklebacks with Genotyping-by-Sequencing
por: Glazer, Andrew M., et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_076fi23ebe051e48ngbf8fpsrg