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Hybrid Methods in Iron-Sulfur Cluster Biogenesis
Hybrid methods, which combine and integrate several biochemical and biophysical techniques, have rapidly caught up in the last twenty years to provide a way to obtain a fuller description of proteins and molecular complexes with sizes and complexity otherwise not easily affordable. Here, we review t...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2017
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5346568/ https://www.ncbi.nlm.nih.gov/pubmed/28349052 http://dx.doi.org/10.3389/fmolb.2017.00012 |
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author | Prischi, Filippo Pastore, Annalisa |
author_facet | Prischi, Filippo Pastore, Annalisa |
author_sort | Prischi, Filippo |
collection | PubMed |
description | Hybrid methods, which combine and integrate several biochemical and biophysical techniques, have rapidly caught up in the last twenty years to provide a way to obtain a fuller description of proteins and molecular complexes with sizes and complexity otherwise not easily affordable. Here, we review the use of a robust hybrid methodology based on a mixture of NMR, SAXS, site directed mutagenesis and molecular docking which we have developed to determine the structure of weakly interacting molecular complexes. We applied this technique to gain insights into the structure of complexes formed amongst proteins involved in the molecular machine, which produces the essential iron-sulfur cluster prosthetic groups. Our results were validated both by X-ray structures and by other groups who adopted the same approach. We discuss the advantages and the limitations of our methodology and propose new avenues, which could improve it. |
format | Online Article Text |
id | pubmed-5346568 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-53465682017-03-27 Hybrid Methods in Iron-Sulfur Cluster Biogenesis Prischi, Filippo Pastore, Annalisa Front Mol Biosci Molecular Biosciences Hybrid methods, which combine and integrate several biochemical and biophysical techniques, have rapidly caught up in the last twenty years to provide a way to obtain a fuller description of proteins and molecular complexes with sizes and complexity otherwise not easily affordable. Here, we review the use of a robust hybrid methodology based on a mixture of NMR, SAXS, site directed mutagenesis and molecular docking which we have developed to determine the structure of weakly interacting molecular complexes. We applied this technique to gain insights into the structure of complexes formed amongst proteins involved in the molecular machine, which produces the essential iron-sulfur cluster prosthetic groups. Our results were validated both by X-ray structures and by other groups who adopted the same approach. We discuss the advantages and the limitations of our methodology and propose new avenues, which could improve it. Frontiers Media S.A. 2017-03-13 /pmc/articles/PMC5346568/ /pubmed/28349052 http://dx.doi.org/10.3389/fmolb.2017.00012 Text en Copyright © 2017 Prischi and Pastore. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Molecular Biosciences Prischi, Filippo Pastore, Annalisa Hybrid Methods in Iron-Sulfur Cluster Biogenesis |
title | Hybrid Methods in Iron-Sulfur Cluster Biogenesis |
title_full | Hybrid Methods in Iron-Sulfur Cluster Biogenesis |
title_fullStr | Hybrid Methods in Iron-Sulfur Cluster Biogenesis |
title_full_unstemmed | Hybrid Methods in Iron-Sulfur Cluster Biogenesis |
title_short | Hybrid Methods in Iron-Sulfur Cluster Biogenesis |
title_sort | hybrid methods in iron-sulfur cluster biogenesis |
topic | Molecular Biosciences |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5346568/ https://www.ncbi.nlm.nih.gov/pubmed/28349052 http://dx.doi.org/10.3389/fmolb.2017.00012 |
work_keys_str_mv | AT prischifilippo hybridmethodsinironsulfurclusterbiogenesis AT pastoreannalisa hybridmethodsinironsulfurclusterbiogenesis |