Cargando…

Guide Picker is a comprehensive design tool for visualizing and selecting guides for CRISPR experiments

BACKGROUND: Guide Picker (https://www.deskgen.com/guide-picker/) serves as a meta tool for designing CRISPR experiments by presenting ten different guide RNA scoring functions in one simple graphical interface. It allows investigators to simultaneously visualize and sort through every guide targetin...

Descripción completa

Detalles Bibliográficos
Autores principales: Hough, Soren H., Kancleris, Kris, Brody, Leigh, Humphryes-Kirilov, Neil, Wolanski, Joseph, Dunaway, Keith, Ajetunmobi, Ayokunmi, Dillard, Victor
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5348774/
https://www.ncbi.nlm.nih.gov/pubmed/28288556
http://dx.doi.org/10.1186/s12859-017-1581-4
_version_ 1782514318918549504
author Hough, Soren H.
Kancleris, Kris
Brody, Leigh
Humphryes-Kirilov, Neil
Wolanski, Joseph
Dunaway, Keith
Ajetunmobi, Ayokunmi
Dillard, Victor
author_facet Hough, Soren H.
Kancleris, Kris
Brody, Leigh
Humphryes-Kirilov, Neil
Wolanski, Joseph
Dunaway, Keith
Ajetunmobi, Ayokunmi
Dillard, Victor
author_sort Hough, Soren H.
collection PubMed
description BACKGROUND: Guide Picker (https://www.deskgen.com/guide-picker/) serves as a meta tool for designing CRISPR experiments by presenting ten different guide RNA scoring functions in one simple graphical interface. It allows investigators to simultaneously visualize and sort through every guide targeting the protein-coding regions of any mouse or human gene. RESULTS: Utilizing a multidimensional graphical display featuring two plots and four axes, Guide Picker can analyze all guides while filtering based on four different criteria at a time. Guide Picker further facilitates the CRISPR design process by using pre-computed scores for all guides, thereby offering rapid guide RNA generation and selection. CONCLUSIONS: The ease-of-use of Guide Picker complements CRISPR itself, matching a powerful and modular biological system with a flexible online web tool that can be used in a variety of genome editing experimental contexts.
format Online
Article
Text
id pubmed-5348774
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-53487742017-03-14 Guide Picker is a comprehensive design tool for visualizing and selecting guides for CRISPR experiments Hough, Soren H. Kancleris, Kris Brody, Leigh Humphryes-Kirilov, Neil Wolanski, Joseph Dunaway, Keith Ajetunmobi, Ayokunmi Dillard, Victor BMC Bioinformatics Software BACKGROUND: Guide Picker (https://www.deskgen.com/guide-picker/) serves as a meta tool for designing CRISPR experiments by presenting ten different guide RNA scoring functions in one simple graphical interface. It allows investigators to simultaneously visualize and sort through every guide targeting the protein-coding regions of any mouse or human gene. RESULTS: Utilizing a multidimensional graphical display featuring two plots and four axes, Guide Picker can analyze all guides while filtering based on four different criteria at a time. Guide Picker further facilitates the CRISPR design process by using pre-computed scores for all guides, thereby offering rapid guide RNA generation and selection. CONCLUSIONS: The ease-of-use of Guide Picker complements CRISPR itself, matching a powerful and modular biological system with a flexible online web tool that can be used in a variety of genome editing experimental contexts. BioMed Central 2017-03-14 /pmc/articles/PMC5348774/ /pubmed/28288556 http://dx.doi.org/10.1186/s12859-017-1581-4 Text en © The Author(s). 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Software
Hough, Soren H.
Kancleris, Kris
Brody, Leigh
Humphryes-Kirilov, Neil
Wolanski, Joseph
Dunaway, Keith
Ajetunmobi, Ayokunmi
Dillard, Victor
Guide Picker is a comprehensive design tool for visualizing and selecting guides for CRISPR experiments
title Guide Picker is a comprehensive design tool for visualizing and selecting guides for CRISPR experiments
title_full Guide Picker is a comprehensive design tool for visualizing and selecting guides for CRISPR experiments
title_fullStr Guide Picker is a comprehensive design tool for visualizing and selecting guides for CRISPR experiments
title_full_unstemmed Guide Picker is a comprehensive design tool for visualizing and selecting guides for CRISPR experiments
title_short Guide Picker is a comprehensive design tool for visualizing and selecting guides for CRISPR experiments
title_sort guide picker is a comprehensive design tool for visualizing and selecting guides for crispr experiments
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5348774/
https://www.ncbi.nlm.nih.gov/pubmed/28288556
http://dx.doi.org/10.1186/s12859-017-1581-4
work_keys_str_mv AT houghsorenh guidepickerisacomprehensivedesigntoolforvisualizingandselectingguidesforcrisprexperiments
AT kancleriskris guidepickerisacomprehensivedesigntoolforvisualizingandselectingguidesforcrisprexperiments
AT brodyleigh guidepickerisacomprehensivedesigntoolforvisualizingandselectingguidesforcrisprexperiments
AT humphryeskirilovneil guidepickerisacomprehensivedesigntoolforvisualizingandselectingguidesforcrisprexperiments
AT wolanskijoseph guidepickerisacomprehensivedesigntoolforvisualizingandselectingguidesforcrisprexperiments
AT dunawaykeith guidepickerisacomprehensivedesigntoolforvisualizingandselectingguidesforcrisprexperiments
AT ajetunmobiayokunmi guidepickerisacomprehensivedesigntoolforvisualizingandselectingguidesforcrisprexperiments
AT dillardvictor guidepickerisacomprehensivedesigntoolforvisualizingandselectingguidesforcrisprexperiments