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Why are essential genes essential? - The essentiality of Saccharomyces genes

Essential genes are defined as required for the survival of an organism or a cell. They are of particular interests, not only for their essential biological functions, but also in practical applications, such as identifying effective drug targets to pathogenic bacteria and fungi. The budding yeast S...

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Autores principales: Zhang, Zhaojie, Ren, Qun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Shared Science Publishers OG 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5349100/
https://www.ncbi.nlm.nih.gov/pubmed/28357303
http://dx.doi.org/10.15698/mic2015.08.218
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author Zhang, Zhaojie
Ren, Qun
author_facet Zhang, Zhaojie
Ren, Qun
author_sort Zhang, Zhaojie
collection PubMed
description Essential genes are defined as required for the survival of an organism or a cell. They are of particular interests, not only for their essential biological functions, but also in practical applications, such as identifying effective drug targets to pathogenic bacteria and fungi. The budding yeast Saccharomyces cerevisiae has approximately 6,000 open reading frames, 15 to 20% of which are deemed as essential. Some of the essential genes, however, appear to perform non-essential functions, such as aging and cell death, while many of the non-essential genes play critical roles in cell survival. In this paper, we reviewed and analyzed the levels of essentiality of the Saccharomyces cerevisiae genes and have grouped the genes into four categories: (1) Conditional essential: essential only under certain circumstances or growth conditions; (2) Essential: required for survival under optimal growth conditions; (3) Redundant essential: synthetic lethal due to redundant pathways or gene duplication; and (4) Absolute essential: the minimal genes required for maintaining a cellular life under a stress-free environment. The essential and non-essential functions of the essential genes were further analyzed.
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spelling pubmed-53491002017-03-29 Why are essential genes essential? - The essentiality of Saccharomyces genes Zhang, Zhaojie Ren, Qun Microb Cell Microbiology Essential genes are defined as required for the survival of an organism or a cell. They are of particular interests, not only for their essential biological functions, but also in practical applications, such as identifying effective drug targets to pathogenic bacteria and fungi. The budding yeast Saccharomyces cerevisiae has approximately 6,000 open reading frames, 15 to 20% of which are deemed as essential. Some of the essential genes, however, appear to perform non-essential functions, such as aging and cell death, while many of the non-essential genes play critical roles in cell survival. In this paper, we reviewed and analyzed the levels of essentiality of the Saccharomyces cerevisiae genes and have grouped the genes into four categories: (1) Conditional essential: essential only under certain circumstances or growth conditions; (2) Essential: required for survival under optimal growth conditions; (3) Redundant essential: synthetic lethal due to redundant pathways or gene duplication; and (4) Absolute essential: the minimal genes required for maintaining a cellular life under a stress-free environment. The essential and non-essential functions of the essential genes were further analyzed. Shared Science Publishers OG 2015-07-25 /pmc/articles/PMC5349100/ /pubmed/28357303 http://dx.doi.org/10.15698/mic2015.08.218 Text en https://creativecommons.org/licenses/by/4.0/ This is an open-access article released under the terms of the Creative Commons Attribution (CC BY) license, which allows the unrestricted use, distribution, and reproduction in any medium, provided the original author and source are acknowledged.
spellingShingle Microbiology
Zhang, Zhaojie
Ren, Qun
Why are essential genes essential? - The essentiality of Saccharomyces genes
title Why are essential genes essential? - The essentiality of Saccharomyces genes
title_full Why are essential genes essential? - The essentiality of Saccharomyces genes
title_fullStr Why are essential genes essential? - The essentiality of Saccharomyces genes
title_full_unstemmed Why are essential genes essential? - The essentiality of Saccharomyces genes
title_short Why are essential genes essential? - The essentiality of Saccharomyces genes
title_sort why are essential genes essential? - the essentiality of saccharomyces genes
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5349100/
https://www.ncbi.nlm.nih.gov/pubmed/28357303
http://dx.doi.org/10.15698/mic2015.08.218
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