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Quantum mechanical calculation of nanomaterial-ligand interaction energies by molecular fractionation with conjugated caps method
Molecular fractionation with conjugate caps (MFCC) method is introduced for the efficient estimation of quantum mechanical (QM) interaction energies between nanomaterial (carbon nanotube, fullerene, and graphene surface) and ligand (charged and neutral). In the calculations, nanomaterials are partit...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group
2017
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5353613/ https://www.ncbi.nlm.nih.gov/pubmed/28300179 http://dx.doi.org/10.1038/srep44645 |
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author | Zhang, Dawei |
author_facet | Zhang, Dawei |
author_sort | Zhang, Dawei |
collection | PubMed |
description | Molecular fractionation with conjugate caps (MFCC) method is introduced for the efficient estimation of quantum mechanical (QM) interaction energies between nanomaterial (carbon nanotube, fullerene, and graphene surface) and ligand (charged and neutral). In the calculations, nanomaterials are partitioned into small fragments and conjugated caps that are properly capped, and the interaction energies can be obtained through the summation of QM calculations of the fragments from which the contribution of the conjugated caps is removed. All the calculations were performed by density functional theory (DFT) and dispersion contributions for the attractive interactions were investigated by dispersion corrected DFT method. The predicted interaction energies by MFCC at each computational level are found to give excellent agreement with full system (FS) calculations with the mean energy deviation just a fractional kcal/mol. The accurate determination of nanomaterial-ligand interaction energies by MFCC suggests that it is an effective method for performing QM calculations on nanomaterial-ligand systems. |
format | Online Article Text |
id | pubmed-5353613 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-53536132017-03-20 Quantum mechanical calculation of nanomaterial-ligand interaction energies by molecular fractionation with conjugated caps method Zhang, Dawei Sci Rep Article Molecular fractionation with conjugate caps (MFCC) method is introduced for the efficient estimation of quantum mechanical (QM) interaction energies between nanomaterial (carbon nanotube, fullerene, and graphene surface) and ligand (charged and neutral). In the calculations, nanomaterials are partitioned into small fragments and conjugated caps that are properly capped, and the interaction energies can be obtained through the summation of QM calculations of the fragments from which the contribution of the conjugated caps is removed. All the calculations were performed by density functional theory (DFT) and dispersion contributions for the attractive interactions were investigated by dispersion corrected DFT method. The predicted interaction energies by MFCC at each computational level are found to give excellent agreement with full system (FS) calculations with the mean energy deviation just a fractional kcal/mol. The accurate determination of nanomaterial-ligand interaction energies by MFCC suggests that it is an effective method for performing QM calculations on nanomaterial-ligand systems. Nature Publishing Group 2017-03-16 /pmc/articles/PMC5353613/ /pubmed/28300179 http://dx.doi.org/10.1038/srep44645 Text en Copyright © 2017, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Zhang, Dawei Quantum mechanical calculation of nanomaterial-ligand interaction energies by molecular fractionation with conjugated caps method |
title | Quantum mechanical calculation of nanomaterial-ligand interaction energies by molecular fractionation with conjugated caps method |
title_full | Quantum mechanical calculation of nanomaterial-ligand interaction energies by molecular fractionation with conjugated caps method |
title_fullStr | Quantum mechanical calculation of nanomaterial-ligand interaction energies by molecular fractionation with conjugated caps method |
title_full_unstemmed | Quantum mechanical calculation of nanomaterial-ligand interaction energies by molecular fractionation with conjugated caps method |
title_short | Quantum mechanical calculation of nanomaterial-ligand interaction energies by molecular fractionation with conjugated caps method |
title_sort | quantum mechanical calculation of nanomaterial-ligand interaction energies by molecular fractionation with conjugated caps method |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5353613/ https://www.ncbi.nlm.nih.gov/pubmed/28300179 http://dx.doi.org/10.1038/srep44645 |
work_keys_str_mv | AT zhangdawei quantummechanicalcalculationofnanomaterialligandinteractionenergiesbymolecularfractionationwithconjugatedcapsmethod |