Cargando…

Precision Medicine in Cats: Novel Niemann‐Pick Type C1 Diagnosed by Whole‐Genome Sequencing

State‐of‐the‐art health care includes genome sequencing of the patient to identify genetic variants that contribute to either the cause of their malady or variants that can be targeted to improve treatment. The goal was to introduce state‐of‐the‐art health care to cats using genomics and a precision...

Descripción completa

Detalles Bibliográficos
Autores principales: Mauler, D.A., Gandolfi, B., Reinero, C.R., O'Brien, D.P., Spooner, J.L., Lyons, L.A., Aberdein, Danielle, Alves, Paulo C., Barsh, Gregory S., Beale, Holly C., Boyko, Adam R., Brockman, Jeffrey A., Castelhano, Marta G., Chan, Patricia P., Matthew Ellinwood, N., Fogle, Jonathan E., Garrick, Dorian J., Helps, Christopher R., Hytönen, Marjo K., Kaukonen, Maria, Kaelin, Christopher B., Leclerc, Emilie, Leeb, Tosso, Lohi, Hannes, Longeri, Maria, Malik, Richard, Montague, Michael J., Munday, John S., Murphy, William J., Pedersen, Niels C., Rothschild, Max F., Stern, Joshua A., Swanson, William F., Terio, Karen A., Todhunter, Rory J., Ueda, Yu, Warren, Wesley C., Wilcox, Elizabeth A., Wildschutte, Julia H.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5354023/
https://www.ncbi.nlm.nih.gov/pubmed/28233346
http://dx.doi.org/10.1111/jvim.14599
_version_ 1782515249908285440
author Mauler, D.A.
Gandolfi, B.
Reinero, C.R.
O'Brien, D.P.
Spooner, J.L.
Lyons, L.A.
Aberdein, Danielle
Alves, Paulo C.
Barsh, Gregory S.
Beale, Holly C.
Boyko, Adam R.
Brockman, Jeffrey A.
Castelhano, Marta G.
Chan, Patricia P.
Matthew Ellinwood, N.
Fogle, Jonathan E.
Garrick, Dorian J.
Helps, Christopher R.
Hytönen, Marjo K.
Kaukonen, Maria
Kaelin, Christopher B.
Leclerc, Emilie
Leeb, Tosso
Lohi, Hannes
Longeri, Maria
Malik, Richard
Montague, Michael J.
Munday, John S.
Murphy, William J.
Pedersen, Niels C.
Rothschild, Max F.
Stern, Joshua A.
Swanson, William F.
Terio, Karen A.
Todhunter, Rory J.
Ueda, Yu
Warren, Wesley C.
Wilcox, Elizabeth A.
Wildschutte, Julia H.
author_facet Mauler, D.A.
Gandolfi, B.
Reinero, C.R.
O'Brien, D.P.
Spooner, J.L.
Lyons, L.A.
Aberdein, Danielle
Alves, Paulo C.
Barsh, Gregory S.
Beale, Holly C.
Boyko, Adam R.
Brockman, Jeffrey A.
Castelhano, Marta G.
Chan, Patricia P.
Matthew Ellinwood, N.
Fogle, Jonathan E.
Garrick, Dorian J.
Helps, Christopher R.
Hytönen, Marjo K.
Kaukonen, Maria
Kaelin, Christopher B.
Leclerc, Emilie
Leeb, Tosso
Lohi, Hannes
Longeri, Maria
Malik, Richard
Montague, Michael J.
Munday, John S.
Murphy, William J.
Pedersen, Niels C.
Rothschild, Max F.
Stern, Joshua A.
Swanson, William F.
Terio, Karen A.
Todhunter, Rory J.
Ueda, Yu
Warren, Wesley C.
Wilcox, Elizabeth A.
Wildschutte, Julia H.
author_sort Mauler, D.A.
collection PubMed
description State‐of‐the‐art health care includes genome sequencing of the patient to identify genetic variants that contribute to either the cause of their malady or variants that can be targeted to improve treatment. The goal was to introduce state‐of‐the‐art health care to cats using genomics and a precision medicine approach. To test the feasibility of a precision medicine approach in domestic cats, a single cat that presented to the University of Missouri, Veterinary Health Center with an undiagnosed neurologic disease was whole‐genome sequenced. The DNA variants from the cat were compared to the DNA variant database produced by the 99 Lives Cat Genome Sequencing Consortium. Approximately 25× genomic coverage was produced for the cat. A predicted p.H441P missense mutation was identified in NPC1, the gene causing Niemann‐Pick type C1 on cat chromosome D3.47456793 caused by an adenine‐to‐cytosine transversion, c.1322A>C. The cat was homozygous for the variant. The variant was not identified in any other 73 domestic and 9 wild felids in the sequence database or 190 additionally genotyped cats of various breeds. The successful effort suggested precision medicine is feasible for cats and other undiagnosed cats may benefit from a genomic analysis approach. The 99 Lives DNA variant database was sufficient but would benefit from additional cat sequences. Other cats with the mutation may be identified and could be introduced as a new biomedical model for NPC1. A genetic test could eliminate the disease variant from the population.
format Online
Article
Text
id pubmed-5354023
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-53540232017-03-22 Precision Medicine in Cats: Novel Niemann‐Pick Type C1 Diagnosed by Whole‐Genome Sequencing Mauler, D.A. Gandolfi, B. Reinero, C.R. O'Brien, D.P. Spooner, J.L. Lyons, L.A. Aberdein, Danielle Alves, Paulo C. Barsh, Gregory S. Beale, Holly C. Boyko, Adam R. Brockman, Jeffrey A. Castelhano, Marta G. Chan, Patricia P. Matthew Ellinwood, N. Fogle, Jonathan E. Garrick, Dorian J. Helps, Christopher R. Hytönen, Marjo K. Kaukonen, Maria Kaelin, Christopher B. Leclerc, Emilie Leeb, Tosso Lohi, Hannes Longeri, Maria Malik, Richard Montague, Michael J. Munday, John S. Murphy, William J. Pedersen, Niels C. Rothschild, Max F. Stern, Joshua A. Swanson, William F. Terio, Karen A. Todhunter, Rory J. Ueda, Yu Warren, Wesley C. Wilcox, Elizabeth A. Wildschutte, Julia H. J Vet Intern Med SMALL ANIMAL State‐of‐the‐art health care includes genome sequencing of the patient to identify genetic variants that contribute to either the cause of their malady or variants that can be targeted to improve treatment. The goal was to introduce state‐of‐the‐art health care to cats using genomics and a precision medicine approach. To test the feasibility of a precision medicine approach in domestic cats, a single cat that presented to the University of Missouri, Veterinary Health Center with an undiagnosed neurologic disease was whole‐genome sequenced. The DNA variants from the cat were compared to the DNA variant database produced by the 99 Lives Cat Genome Sequencing Consortium. Approximately 25× genomic coverage was produced for the cat. A predicted p.H441P missense mutation was identified in NPC1, the gene causing Niemann‐Pick type C1 on cat chromosome D3.47456793 caused by an adenine‐to‐cytosine transversion, c.1322A>C. The cat was homozygous for the variant. The variant was not identified in any other 73 domestic and 9 wild felids in the sequence database or 190 additionally genotyped cats of various breeds. The successful effort suggested precision medicine is feasible for cats and other undiagnosed cats may benefit from a genomic analysis approach. The 99 Lives DNA variant database was sufficient but would benefit from additional cat sequences. Other cats with the mutation may be identified and could be introduced as a new biomedical model for NPC1. A genetic test could eliminate the disease variant from the population. John Wiley and Sons Inc. 2017-02-24 2017 /pmc/articles/PMC5354023/ /pubmed/28233346 http://dx.doi.org/10.1111/jvim.14599 Text en Copyright © 2016 The Authors. Journal of Veterinary Internal Medicine published by Wiley Periodicals, Inc. on behalf of the American College of Veterinary Internal Medicine. This is an open access article under the terms of the Creative Commons Attribution‐NonCommercial (http://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle SMALL ANIMAL
Mauler, D.A.
Gandolfi, B.
Reinero, C.R.
O'Brien, D.P.
Spooner, J.L.
Lyons, L.A.
Aberdein, Danielle
Alves, Paulo C.
Barsh, Gregory S.
Beale, Holly C.
Boyko, Adam R.
Brockman, Jeffrey A.
Castelhano, Marta G.
Chan, Patricia P.
Matthew Ellinwood, N.
Fogle, Jonathan E.
Garrick, Dorian J.
Helps, Christopher R.
Hytönen, Marjo K.
Kaukonen, Maria
Kaelin, Christopher B.
Leclerc, Emilie
Leeb, Tosso
Lohi, Hannes
Longeri, Maria
Malik, Richard
Montague, Michael J.
Munday, John S.
Murphy, William J.
Pedersen, Niels C.
Rothschild, Max F.
Stern, Joshua A.
Swanson, William F.
Terio, Karen A.
Todhunter, Rory J.
Ueda, Yu
Warren, Wesley C.
Wilcox, Elizabeth A.
Wildschutte, Julia H.
Precision Medicine in Cats: Novel Niemann‐Pick Type C1 Diagnosed by Whole‐Genome Sequencing
title Precision Medicine in Cats: Novel Niemann‐Pick Type C1 Diagnosed by Whole‐Genome Sequencing
title_full Precision Medicine in Cats: Novel Niemann‐Pick Type C1 Diagnosed by Whole‐Genome Sequencing
title_fullStr Precision Medicine in Cats: Novel Niemann‐Pick Type C1 Diagnosed by Whole‐Genome Sequencing
title_full_unstemmed Precision Medicine in Cats: Novel Niemann‐Pick Type C1 Diagnosed by Whole‐Genome Sequencing
title_short Precision Medicine in Cats: Novel Niemann‐Pick Type C1 Diagnosed by Whole‐Genome Sequencing
title_sort precision medicine in cats: novel niemann‐pick type c1 diagnosed by whole‐genome sequencing
topic SMALL ANIMAL
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5354023/
https://www.ncbi.nlm.nih.gov/pubmed/28233346
http://dx.doi.org/10.1111/jvim.14599
work_keys_str_mv AT maulerda precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT gandolfib precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT reinerocr precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT obriendp precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT spoonerjl precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT lyonsla precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT aberdeindanielle precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT alvespauloc precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT barshgregorys precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT bealehollyc precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT boykoadamr precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT brockmanjeffreya precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT castelhanomartag precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT chanpatriciap precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT matthewellinwoodn precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT foglejonathane precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT garrickdorianj precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT helpschristopherr precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT hytonenmarjok precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT kaukonenmaria precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT kaelinchristopherb precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT leclercemilie precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT leebtosso precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT lohihannes precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT longerimaria precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT malikrichard precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT montaguemichaelj precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT mundayjohns precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT murphywilliamj precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT pedersennielsc precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT rothschildmaxf precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT sternjoshuaa precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT swansonwilliamf precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT teriokarena precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT todhunterroryj precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT uedayu precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT warrenwesleyc precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT wilcoxelizabetha precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing
AT wildschuttejuliah precisionmedicineincatsnovelniemannpicktypec1diagnosedbywholegenomesequencing