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Welcoming natural isotopic abundance in solid-state NMR: probing π-stacking and supramolecular structure of organic nanoassemblies using DNP

The self-assembly of small organic molecules is an intriguing phenomenon, which provides nanoscale structures for applications in numerous fields from medicine to molecular electronics. Detailed knowledge of their structure, in particular on the supramolecular level, is a prerequisite for the ration...

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Autores principales: Märker, Katharina, Paul, Subhradip, Fernández-de-Alba, Carlos, Lee, Daniel, Mouesca, Jean-Marie, Hediger, Sabine, De Paëpe, Gaël
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Royal Society of Chemistry 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5354064/
https://www.ncbi.nlm.nih.gov/pubmed/28451235
http://dx.doi.org/10.1039/c6sc02709a
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author Märker, Katharina
Paul, Subhradip
Fernández-de-Alba, Carlos
Lee, Daniel
Mouesca, Jean-Marie
Hediger, Sabine
De Paëpe, Gaël
author_facet Märker, Katharina
Paul, Subhradip
Fernández-de-Alba, Carlos
Lee, Daniel
Mouesca, Jean-Marie
Hediger, Sabine
De Paëpe, Gaël
author_sort Märker, Katharina
collection PubMed
description The self-assembly of small organic molecules is an intriguing phenomenon, which provides nanoscale structures for applications in numerous fields from medicine to molecular electronics. Detailed knowledge of their structure, in particular on the supramolecular level, is a prerequisite for the rational design of improved self-assembled systems. In this work, we prove the feasibility of a novel concept of NMR-based 3D structure determination of such assemblies in the solid state. The key point of this concept is the deliberate use of samples that contain (13)C at its natural isotopic abundance (NA, 1.1%), while exploiting magic-angle spinning dynamic nuclear polarization (MAS-DNP) to compensate for the reduced sensitivity. Since dipolar truncation effects are suppressed to a large extent in NA samples, unique and highly informative spectra can be recorded which are impossible to obtain on an isotopically labeled system. On the self-assembled cyclic diphenylalanine peptide, we demonstrate the detection of long-range internuclear distances up to ∼7 Å, allowing us to observe π-stacking through (13)C–(13)C correlation spectra, providing a powerful tool for the analysis of one of the most important non-covalent interactions. Furthermore, experimental polarization transfer curves are in remarkable agreement with numerical simulations based on the crystallographic structure, and can be fully rationalized as the superposition of intra- and intermolecular contributions. This new approach to NMR crystallography provides access to rich and precise structural information, opening up a new avenue to de novo crystal structure determination by NMR.
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spelling pubmed-53540642017-04-27 Welcoming natural isotopic abundance in solid-state NMR: probing π-stacking and supramolecular structure of organic nanoassemblies using DNP Märker, Katharina Paul, Subhradip Fernández-de-Alba, Carlos Lee, Daniel Mouesca, Jean-Marie Hediger, Sabine De Paëpe, Gaël Chem Sci Chemistry The self-assembly of small organic molecules is an intriguing phenomenon, which provides nanoscale structures for applications in numerous fields from medicine to molecular electronics. Detailed knowledge of their structure, in particular on the supramolecular level, is a prerequisite for the rational design of improved self-assembled systems. In this work, we prove the feasibility of a novel concept of NMR-based 3D structure determination of such assemblies in the solid state. The key point of this concept is the deliberate use of samples that contain (13)C at its natural isotopic abundance (NA, 1.1%), while exploiting magic-angle spinning dynamic nuclear polarization (MAS-DNP) to compensate for the reduced sensitivity. Since dipolar truncation effects are suppressed to a large extent in NA samples, unique and highly informative spectra can be recorded which are impossible to obtain on an isotopically labeled system. On the self-assembled cyclic diphenylalanine peptide, we demonstrate the detection of long-range internuclear distances up to ∼7 Å, allowing us to observe π-stacking through (13)C–(13)C correlation spectra, providing a powerful tool for the analysis of one of the most important non-covalent interactions. Furthermore, experimental polarization transfer curves are in remarkable agreement with numerical simulations based on the crystallographic structure, and can be fully rationalized as the superposition of intra- and intermolecular contributions. This new approach to NMR crystallography provides access to rich and precise structural information, opening up a new avenue to de novo crystal structure determination by NMR. Royal Society of Chemistry 2017-02-01 2016-10-19 /pmc/articles/PMC5354064/ /pubmed/28451235 http://dx.doi.org/10.1039/c6sc02709a Text en This journal is © The Royal Society of Chemistry 2016 http://creativecommons.org/licenses/by-nc/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial 3.0 Unported License (http://creativecommons.org/licenses/by-nc/3.0/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Chemistry
Märker, Katharina
Paul, Subhradip
Fernández-de-Alba, Carlos
Lee, Daniel
Mouesca, Jean-Marie
Hediger, Sabine
De Paëpe, Gaël
Welcoming natural isotopic abundance in solid-state NMR: probing π-stacking and supramolecular structure of organic nanoassemblies using DNP
title Welcoming natural isotopic abundance in solid-state NMR: probing π-stacking and supramolecular structure of organic nanoassemblies using DNP
title_full Welcoming natural isotopic abundance in solid-state NMR: probing π-stacking and supramolecular structure of organic nanoassemblies using DNP
title_fullStr Welcoming natural isotopic abundance in solid-state NMR: probing π-stacking and supramolecular structure of organic nanoassemblies using DNP
title_full_unstemmed Welcoming natural isotopic abundance in solid-state NMR: probing π-stacking and supramolecular structure of organic nanoassemblies using DNP
title_short Welcoming natural isotopic abundance in solid-state NMR: probing π-stacking and supramolecular structure of organic nanoassemblies using DNP
title_sort welcoming natural isotopic abundance in solid-state nmr: probing π-stacking and supramolecular structure of organic nanoassemblies using dnp
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5354064/
https://www.ncbi.nlm.nih.gov/pubmed/28451235
http://dx.doi.org/10.1039/c6sc02709a
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