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Adsorption of RNA on mineral surfaces and mineral precipitates

The prebiotic significance of laboratory experiments that study the interactions between oligomeric RNA and mineral species is difficult to know. Natural exemplars of specific minerals can differ widely depending on their provenance. While laboratory-generated samples of synthetic minerals can have...

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Autores principales: Biondi, Elisa, Furukawa, Yoshihiro, Kawai, Jun, Benner, Steven A
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Beilstein-Institut 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5355914/
https://www.ncbi.nlm.nih.gov/pubmed/28382177
http://dx.doi.org/10.3762/bjoc.13.42
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author Biondi, Elisa
Furukawa, Yoshihiro
Kawai, Jun
Benner, Steven A
author_facet Biondi, Elisa
Furukawa, Yoshihiro
Kawai, Jun
Benner, Steven A
author_sort Biondi, Elisa
collection PubMed
description The prebiotic significance of laboratory experiments that study the interactions between oligomeric RNA and mineral species is difficult to know. Natural exemplars of specific minerals can differ widely depending on their provenance. While laboratory-generated samples of synthetic minerals can have controlled compositions, they are often viewed as "unnatural". Here, we show how trends in the interaction of RNA with natural mineral specimens, synthetic mineral specimens, and co-precipitated pairs of synthetic minerals, can make a persuasive case that the observed interactions reflect the composition of the minerals themselves, rather than their being simply examples of large molecules associating nonspecifically with large surfaces. Using this approach, we have discovered Periodic Table trends in the binding of oligomeric RNA to alkaline earth carbonate minerals and alkaline earth sulfate minerals, where those trends are the same when measured in natural and synthetic minerals. They are also validated by comparison of co-precipitated synthetic minerals. We also show differential binding of RNA to polymorphic forms of calcium carbonate, and the stabilization of bound RNA on aragonite. These have relevance to the prebiotic stabilization of RNA, where such carbonate minerals are expected to have been abundant, as they appear to be today on Mars.
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spelling pubmed-53559142017-04-05 Adsorption of RNA on mineral surfaces and mineral precipitates Biondi, Elisa Furukawa, Yoshihiro Kawai, Jun Benner, Steven A Beilstein J Org Chem Full Research Paper The prebiotic significance of laboratory experiments that study the interactions between oligomeric RNA and mineral species is difficult to know. Natural exemplars of specific minerals can differ widely depending on their provenance. While laboratory-generated samples of synthetic minerals can have controlled compositions, they are often viewed as "unnatural". Here, we show how trends in the interaction of RNA with natural mineral specimens, synthetic mineral specimens, and co-precipitated pairs of synthetic minerals, can make a persuasive case that the observed interactions reflect the composition of the minerals themselves, rather than their being simply examples of large molecules associating nonspecifically with large surfaces. Using this approach, we have discovered Periodic Table trends in the binding of oligomeric RNA to alkaline earth carbonate minerals and alkaline earth sulfate minerals, where those trends are the same when measured in natural and synthetic minerals. They are also validated by comparison of co-precipitated synthetic minerals. We also show differential binding of RNA to polymorphic forms of calcium carbonate, and the stabilization of bound RNA on aragonite. These have relevance to the prebiotic stabilization of RNA, where such carbonate minerals are expected to have been abundant, as they appear to be today on Mars. Beilstein-Institut 2017-03-01 /pmc/articles/PMC5355914/ /pubmed/28382177 http://dx.doi.org/10.3762/bjoc.13.42 Text en Copyright © 2017, Biondi et al. https://creativecommons.org/licenses/by/4.0https://www.beilstein-journals.org/bjoc/termsThis is an Open Access article under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The license is subject to the Beilstein Journal of Organic Chemistry terms and conditions: (https://www.beilstein-journals.org/bjoc/terms)
spellingShingle Full Research Paper
Biondi, Elisa
Furukawa, Yoshihiro
Kawai, Jun
Benner, Steven A
Adsorption of RNA on mineral surfaces and mineral precipitates
title Adsorption of RNA on mineral surfaces and mineral precipitates
title_full Adsorption of RNA on mineral surfaces and mineral precipitates
title_fullStr Adsorption of RNA on mineral surfaces and mineral precipitates
title_full_unstemmed Adsorption of RNA on mineral surfaces and mineral precipitates
title_short Adsorption of RNA on mineral surfaces and mineral precipitates
title_sort adsorption of rna on mineral surfaces and mineral precipitates
topic Full Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5355914/
https://www.ncbi.nlm.nih.gov/pubmed/28382177
http://dx.doi.org/10.3762/bjoc.13.42
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