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Identification and analysis of insulin like peptides in nematode secretomes provide targets for parasite control

Insulin-like (ins) peptides play an important role in development and metabolism across the metazoa. In nematodes, these are also required for dauer formation and longevity and are expressed in different types of neurons across various life stages which demonstrate their role in parasites and could...

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Autores principales: Gahoi, Shachi, Gautam, Budhayash
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Biomedical Informatics 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5357569/
https://www.ncbi.nlm.nih.gov/pubmed/28356679
http://dx.doi.org/10.6026/97320630012412
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author Gahoi, Shachi
Gautam, Budhayash
author_facet Gahoi, Shachi
Gautam, Budhayash
author_sort Gahoi, Shachi
collection PubMed
description Insulin-like (ins) peptides play an important role in development and metabolism across the metazoa. In nematodes, these are also required for dauer formation and longevity and are expressed in different types of neurons across various life stages which demonstrate their role in parasites and could become possible targets for parasite control. To date, many nematode genomes are publically available. However, a systematic screening of ins peptides across different nematode group has not been reported. In the present study, we systematically identified ins peptides in the secretomes of 73 nematodes with fully sequenced genomes covering five different groups viz. plant parasitic, animal parasitic, human parasitic, entomopathogenic and free living nematodes. From the total of 93,949 secretory proteins, 176 proteins were uniquely mapped to 40 identified C. elegans ins families. The obtained result showed that 74.15% of the identified ins proteins were represented in free living nematodes only and remaining 25.84% were combinedly identified in all other nematode groups. The ins-1, ins-17 and ins-18 were the only ins families which were detected in all the studied nematode groups. Out of 176 proteins, 96 of ins proteins were predicted as hydrophilic in nature and 39 proteins were found stable using ProtParam analysis. Our study provides insight into the distribution of ins peptides across different group of nematodes and this information could be useful for further experimental study.
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spelling pubmed-53575692017-03-29 Identification and analysis of insulin like peptides in nematode secretomes provide targets for parasite control Gahoi, Shachi Gautam, Budhayash Bioinformation Hypothesis Insulin-like (ins) peptides play an important role in development and metabolism across the metazoa. In nematodes, these are also required for dauer formation and longevity and are expressed in different types of neurons across various life stages which demonstrate their role in parasites and could become possible targets for parasite control. To date, many nematode genomes are publically available. However, a systematic screening of ins peptides across different nematode group has not been reported. In the present study, we systematically identified ins peptides in the secretomes of 73 nematodes with fully sequenced genomes covering five different groups viz. plant parasitic, animal parasitic, human parasitic, entomopathogenic and free living nematodes. From the total of 93,949 secretory proteins, 176 proteins were uniquely mapped to 40 identified C. elegans ins families. The obtained result showed that 74.15% of the identified ins proteins were represented in free living nematodes only and remaining 25.84% were combinedly identified in all other nematode groups. The ins-1, ins-17 and ins-18 were the only ins families which were detected in all the studied nematode groups. Out of 176 proteins, 96 of ins proteins were predicted as hydrophilic in nature and 39 proteins were found stable using ProtParam analysis. Our study provides insight into the distribution of ins peptides across different group of nematodes and this information could be useful for further experimental study. Biomedical Informatics 2016-12-14 /pmc/articles/PMC5357569/ /pubmed/28356679 http://dx.doi.org/10.6026/97320630012412 Text en © 2016 Biomedical Informatics http://creativecommons.org/licenses/by/3.0/ This is an Open Access article which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. This is distributed under the terms of the Creative Commons Attribution License.
spellingShingle Hypothesis
Gahoi, Shachi
Gautam, Budhayash
Identification and analysis of insulin like peptides in nematode secretomes provide targets for parasite control
title Identification and analysis of insulin like peptides in nematode secretomes provide targets for parasite control
title_full Identification and analysis of insulin like peptides in nematode secretomes provide targets for parasite control
title_fullStr Identification and analysis of insulin like peptides in nematode secretomes provide targets for parasite control
title_full_unstemmed Identification and analysis of insulin like peptides in nematode secretomes provide targets for parasite control
title_short Identification and analysis of insulin like peptides in nematode secretomes provide targets for parasite control
title_sort identification and analysis of insulin like peptides in nematode secretomes provide targets for parasite control
topic Hypothesis
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5357569/
https://www.ncbi.nlm.nih.gov/pubmed/28356679
http://dx.doi.org/10.6026/97320630012412
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