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Truke, a web tool to check for and handle excel misidentified gene symbols
BACKGROUND: Genomic datasets accompanying scientific publications show a surprisingly high rate of gene name corruption. This error is generated when files and tables are imported into Microsoft Excel and certain gene symbols are automatically converted into dates. RESULTS: We have developed Truke,...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5359807/ https://www.ncbi.nlm.nih.gov/pubmed/28327106 http://dx.doi.org/10.1186/s12864-017-3631-8 |
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author | Mallona, Izaskun Peinado, Miguel A. |
author_facet | Mallona, Izaskun Peinado, Miguel A. |
author_sort | Mallona, Izaskun |
collection | PubMed |
description | BACKGROUND: Genomic datasets accompanying scientific publications show a surprisingly high rate of gene name corruption. This error is generated when files and tables are imported into Microsoft Excel and certain gene symbols are automatically converted into dates. RESULTS: We have developed Truke, a fexible Web tool to detect, tag and fix, if possible, such misconversions. Aside, Truke is language and regional locale-aware, providing file format customization (decimal symbol, field sepator, etc.) following user’s preferences. CONCLUSIONS: Truke is a data format conversion tool with a unique corrupted gene symbol detection utility. Truke is freely available without registration at http://maplab.cat/truke. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12864-017-3631-8) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-5359807 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-53598072017-03-22 Truke, a web tool to check for and handle excel misidentified gene symbols Mallona, Izaskun Peinado, Miguel A. BMC Genomics Software BACKGROUND: Genomic datasets accompanying scientific publications show a surprisingly high rate of gene name corruption. This error is generated when files and tables are imported into Microsoft Excel and certain gene symbols are automatically converted into dates. RESULTS: We have developed Truke, a fexible Web tool to detect, tag and fix, if possible, such misconversions. Aside, Truke is language and regional locale-aware, providing file format customization (decimal symbol, field sepator, etc.) following user’s preferences. CONCLUSIONS: Truke is a data format conversion tool with a unique corrupted gene symbol detection utility. Truke is freely available without registration at http://maplab.cat/truke. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12864-017-3631-8) contains supplementary material, which is available to authorized users. BioMed Central 2017-03-21 /pmc/articles/PMC5359807/ /pubmed/28327106 http://dx.doi.org/10.1186/s12864-017-3631-8 Text en © The Author(s) 2017 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver(http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Software Mallona, Izaskun Peinado, Miguel A. Truke, a web tool to check for and handle excel misidentified gene symbols |
title | Truke, a web tool to check for and handle excel misidentified gene symbols |
title_full | Truke, a web tool to check for and handle excel misidentified gene symbols |
title_fullStr | Truke, a web tool to check for and handle excel misidentified gene symbols |
title_full_unstemmed | Truke, a web tool to check for and handle excel misidentified gene symbols |
title_short | Truke, a web tool to check for and handle excel misidentified gene symbols |
title_sort | truke, a web tool to check for and handle excel misidentified gene symbols |
topic | Software |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5359807/ https://www.ncbi.nlm.nih.gov/pubmed/28327106 http://dx.doi.org/10.1186/s12864-017-3631-8 |
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