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Truke, a web tool to check for and handle excel misidentified gene symbols

BACKGROUND: Genomic datasets accompanying scientific publications show a surprisingly high rate of gene name corruption. This error is generated when files and tables are imported into Microsoft Excel and certain gene symbols are automatically converted into dates. RESULTS: We have developed Truke,...

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Detalles Bibliográficos
Autores principales: Mallona, Izaskun, Peinado, Miguel A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5359807/
https://www.ncbi.nlm.nih.gov/pubmed/28327106
http://dx.doi.org/10.1186/s12864-017-3631-8
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author Mallona, Izaskun
Peinado, Miguel A.
author_facet Mallona, Izaskun
Peinado, Miguel A.
author_sort Mallona, Izaskun
collection PubMed
description BACKGROUND: Genomic datasets accompanying scientific publications show a surprisingly high rate of gene name corruption. This error is generated when files and tables are imported into Microsoft Excel and certain gene symbols are automatically converted into dates. RESULTS: We have developed Truke, a fexible Web tool to detect, tag and fix, if possible, such misconversions. Aside, Truke is language and regional locale-aware, providing file format customization (decimal symbol, field sepator, etc.) following user’s preferences. CONCLUSIONS: Truke is a data format conversion tool with a unique corrupted gene symbol detection utility. Truke is freely available without registration at http://maplab.cat/truke. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12864-017-3631-8) contains supplementary material, which is available to authorized users.
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spelling pubmed-53598072017-03-22 Truke, a web tool to check for and handle excel misidentified gene symbols Mallona, Izaskun Peinado, Miguel A. BMC Genomics Software BACKGROUND: Genomic datasets accompanying scientific publications show a surprisingly high rate of gene name corruption. This error is generated when files and tables are imported into Microsoft Excel and certain gene symbols are automatically converted into dates. RESULTS: We have developed Truke, a fexible Web tool to detect, tag and fix, if possible, such misconversions. Aside, Truke is language and regional locale-aware, providing file format customization (decimal symbol, field sepator, etc.) following user’s preferences. CONCLUSIONS: Truke is a data format conversion tool with a unique corrupted gene symbol detection utility. Truke is freely available without registration at http://maplab.cat/truke. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12864-017-3631-8) contains supplementary material, which is available to authorized users. BioMed Central 2017-03-21 /pmc/articles/PMC5359807/ /pubmed/28327106 http://dx.doi.org/10.1186/s12864-017-3631-8 Text en © The Author(s) 2017 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver(http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Software
Mallona, Izaskun
Peinado, Miguel A.
Truke, a web tool to check for and handle excel misidentified gene symbols
title Truke, a web tool to check for and handle excel misidentified gene symbols
title_full Truke, a web tool to check for and handle excel misidentified gene symbols
title_fullStr Truke, a web tool to check for and handle excel misidentified gene symbols
title_full_unstemmed Truke, a web tool to check for and handle excel misidentified gene symbols
title_short Truke, a web tool to check for and handle excel misidentified gene symbols
title_sort truke, a web tool to check for and handle excel misidentified gene symbols
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5359807/
https://www.ncbi.nlm.nih.gov/pubmed/28327106
http://dx.doi.org/10.1186/s12864-017-3631-8
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