Cargando…
Selection and validation of reference genes for qRT-PCR analysis during biological invasions: The thermal adaptability of Bemisia tabaci MED
The Bemisia tabaci Mediterranean (MED) cryptic species has been rapidly invading to most parts of the world owing to its strong ecological adaptability, which is considered as a model insect for stress tolerance studies under rapidly changing environments. Selection of a suitable reference gene for...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2017
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5360248/ https://www.ncbi.nlm.nih.gov/pubmed/28323834 http://dx.doi.org/10.1371/journal.pone.0173821 |
_version_ | 1782516555665375232 |
---|---|
author | Dai, Tian-Mei Lü, Zhi-Chuang Liu, Wan-Xue Wan, Fang-Hao |
author_facet | Dai, Tian-Mei Lü, Zhi-Chuang Liu, Wan-Xue Wan, Fang-Hao |
author_sort | Dai, Tian-Mei |
collection | PubMed |
description | The Bemisia tabaci Mediterranean (MED) cryptic species has been rapidly invading to most parts of the world owing to its strong ecological adaptability, which is considered as a model insect for stress tolerance studies under rapidly changing environments. Selection of a suitable reference gene for quantitative stress-responsive gene expression analysis based on qRT-PCR is critical for elaborating the molecular mechanisms of thermotolerance. To obtain accurate and reliable normalization data in MED, eight candidate reference genes (β-act, GAPDH, β-tub, EF1-α, GST, 18S, RPL13A and α-tub) were examined under various thermal stresses for varied time periods by using geNorm, NormFinder and BestKeeper algorithms, respectively. Our results revealed that β-tub and EF1-α were the best reference genes across all sample sets. On the other hand, 18S and GADPH showed the least stability for all the samples studied. β-act was proved to be highly stable only in case of short-term thermal stresses. To our knowledge this was the first comprehensive report on validation of reference genes under varying temperature stresses in MED. The study could expedite particular discovery of thermotolerance genes in MED. Further, the present results can form the basis of further research on suitable reference genes in this invasive insect and will facilitate transcript profiling in other invasive insects. |
format | Online Article Text |
id | pubmed-5360248 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-53602482017-04-06 Selection and validation of reference genes for qRT-PCR analysis during biological invasions: The thermal adaptability of Bemisia tabaci MED Dai, Tian-Mei Lü, Zhi-Chuang Liu, Wan-Xue Wan, Fang-Hao PLoS One Research Article The Bemisia tabaci Mediterranean (MED) cryptic species has been rapidly invading to most parts of the world owing to its strong ecological adaptability, which is considered as a model insect for stress tolerance studies under rapidly changing environments. Selection of a suitable reference gene for quantitative stress-responsive gene expression analysis based on qRT-PCR is critical for elaborating the molecular mechanisms of thermotolerance. To obtain accurate and reliable normalization data in MED, eight candidate reference genes (β-act, GAPDH, β-tub, EF1-α, GST, 18S, RPL13A and α-tub) were examined under various thermal stresses for varied time periods by using geNorm, NormFinder and BestKeeper algorithms, respectively. Our results revealed that β-tub and EF1-α were the best reference genes across all sample sets. On the other hand, 18S and GADPH showed the least stability for all the samples studied. β-act was proved to be highly stable only in case of short-term thermal stresses. To our knowledge this was the first comprehensive report on validation of reference genes under varying temperature stresses in MED. The study could expedite particular discovery of thermotolerance genes in MED. Further, the present results can form the basis of further research on suitable reference genes in this invasive insect and will facilitate transcript profiling in other invasive insects. Public Library of Science 2017-03-21 /pmc/articles/PMC5360248/ /pubmed/28323834 http://dx.doi.org/10.1371/journal.pone.0173821 Text en © 2017 Dai et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Dai, Tian-Mei Lü, Zhi-Chuang Liu, Wan-Xue Wan, Fang-Hao Selection and validation of reference genes for qRT-PCR analysis during biological invasions: The thermal adaptability of Bemisia tabaci MED |
title | Selection and validation of reference genes for qRT-PCR analysis during biological invasions: The thermal adaptability of Bemisia tabaci MED |
title_full | Selection and validation of reference genes for qRT-PCR analysis during biological invasions: The thermal adaptability of Bemisia tabaci MED |
title_fullStr | Selection and validation of reference genes for qRT-PCR analysis during biological invasions: The thermal adaptability of Bemisia tabaci MED |
title_full_unstemmed | Selection and validation of reference genes for qRT-PCR analysis during biological invasions: The thermal adaptability of Bemisia tabaci MED |
title_short | Selection and validation of reference genes for qRT-PCR analysis during biological invasions: The thermal adaptability of Bemisia tabaci MED |
title_sort | selection and validation of reference genes for qrt-pcr analysis during biological invasions: the thermal adaptability of bemisia tabaci med |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5360248/ https://www.ncbi.nlm.nih.gov/pubmed/28323834 http://dx.doi.org/10.1371/journal.pone.0173821 |
work_keys_str_mv | AT daitianmei selectionandvalidationofreferencegenesforqrtpcranalysisduringbiologicalinvasionsthethermaladaptabilityofbemisiatabacimed AT luzhichuang selectionandvalidationofreferencegenesforqrtpcranalysisduringbiologicalinvasionsthethermaladaptabilityofbemisiatabacimed AT liuwanxue selectionandvalidationofreferencegenesforqrtpcranalysisduringbiologicalinvasionsthethermaladaptabilityofbemisiatabacimed AT wanfanghao selectionandvalidationofreferencegenesforqrtpcranalysisduringbiologicalinvasionsthethermaladaptabilityofbemisiatabacimed |