Cargando…

High-throughput amplicon sequencing and stream benthic bacteria: identifying the best taxonomic level for multiple-stressor research

Disentangling the individual and interactive effects of multiple stressors on microbial communities is a key challenge to our understanding and management of ecosystems. Advances in molecular techniques allow studying microbial communities in situ and with high taxonomic resolution. However, the tax...

Descripción completa

Detalles Bibliográficos
Autores principales:	Salis, R. K., Bruder, A., Piggott, J. J., Summerfield, T. C., Matthaei, C. D.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group 2017
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5361126/ https://www.ncbi.nlm.nih.gov/pubmed/28327636 http://dx.doi.org/10.1038/srep44657

Ejemplares similares

Impacts of multiple anthropogenic stressors on stream macroinvertebrate community composition and functional diversity
por: Juvigny‐Khenafou, Noel P. D., et al.
Publicado: (2020)

Multiple Stressors in Agricultural Streams: A Mesocosm Study of Interactions among Raised Water Temperature, Sediment Addition and Nutrient Enrichment
por: Piggott, Jeremy J., et al.
Publicado: (2012)

Reconceptualizing synergism and antagonism among multiple stressors
por: Piggott, Jeremy J, et al.
Publicado: (2015)

Sensitivity of Heterogeneous Marine Benthic Habitats to Subtle Stressors
por: Rodil, Iván F., et al.
Publicado: (2013)

Environmental stressors, complex interactions and marine benthic communities’ responses
por: Carrier-Belleau, Charlotte, et al.
Publicado: (2021)

Two-Stage Clustering (TSC): A Pipeline for Selecting Operational Taxonomic Units for the High-Throughput Sequencing of PCR Amplicons
por: Jiang, Xiao-Tao, et al.
Publicado: (2012)

Data on taxonomic annotation and diversity of 18S rRNA gene amplicon libraries derived from high throughput sequencing
por: Kataoka, Takafumi, et al.
Publicado: (2019)

Identifying Key Stressors Driving Biological Impairment in Freshwater Streams in the Chesapeake Bay Watershed, USA
por: Fanelli, Rosemary M., et al.
Publicado: (2022)

Coastal Habitats as Surrogates for Taxonomic, Functional and Trophic Structures of Benthic Faunal Communities
por: Törnroos, Anna, et al.
Publicado: (2013)

Methane-Derived Carbon in the Benthic Food Web in Stream Impoundments
por: Mbaka, John Gichimu, et al.
Publicado: (2014)

Functional trait dataset of benthic macroinvertebrates in South Korean streams
por: Adhurya, Sagar, et al.
Publicado: (2023)

Effects of Consumer Interactions on Benthic Resources and Ecosystem Processes in a Neotropical Stream
por: Marshall, Michael C., et al.
Publicado: (2012)

Taxonomic and functional surrogates of sessile benthic diversity in Mediterranean marine caves
por: Gerovasileiou, Vasilis, et al.
Publicado: (2017)

Taxonomic and Functional Diversity of Benthic Macroinvertebrate Assemblages in Reservoirs of South Korea
por: Lee, Da-Yeong, et al.
Publicado: (2022)

Correction to: Identifying Key Stressors Driving Biological Impairment in Freshwater Streams in the Chesapeake Bay Watershed, USA
por: Fanelli, Rosemary M., et al.
Publicado: (2022)

Temporal and spatial changes in benthic invertebrate trophic networks along a taxonomic richness gradient
por: Garrison, Julie A., et al.
Publicado: (2022)

Spatial patterns of benthic biofilm diversity among streams draining proglacial floodplains
por: Brandani, Jade, et al.
Publicado: (2022)

Habitat connectivity and in-stream vegetation control temporal variability of benthic invertebrate communities
por: Huttunen, K.-L., et al.
Publicado: (2017)

Comparison of Methods for Picking the Operational Taxonomic Units From Amplicon Sequences
por: Wei, Ze-Gang, et al.
Publicado: (2021)

Rapid and accurate taxonomic classification of cpn60 amplicon sequence variants
por: Ren, Qingyi, et al.
Publicado: (2023)

Stream benthic macroinvertebrates abundances over a 6-year monitoring period of an Italian glacier-fed stream
por: Scotti, Alberto, et al.
Publicado: (2019)

Taxonomic and functional diversity of benthic macrofauna associated with rhodolith beds in SE Brazil
por: Stelzer, Patricia Sarcinelli, et al.
Publicado: (2021)

Concatenation of paired-end reads improves taxonomic classification of amplicons for profiling microbial communities
por: Dacey, Daniel P., et al.
Publicado: (2021)

Homogeneous Environmental Selection Structures the Bacterial Communities of Benthic Biofilms in Proglacial Floodplain Streams
por: Brandani, Jade, et al.
Publicado: (2023)

A Multimetric Benthic Macroinvertebrate Index for the Assessment of Stream Biotic Integrity in Korea
por: Jun, Yung-Chul, et al.
Publicado: (2012)

Benthic Diatom Based Indices for Water Quality Assessment in Two Subtropical Streams
por: Tan, Xiang, et al.
Publicado: (2017)

SESAME (SEquence Sorter & AMplicon Explorer): genotyping based on high-throughput multiplex amplicon sequencing
por: Meglécz, Emese, et al.
Publicado: (2011)

Evaluation of an alternate method for sampling benthic macroinvertebrates in low-gradient streams sampled as part of the National Rivers and Streams Assessment
por: Flotemersch, Joseph E., et al.
Publicado: (2013)

Metagenomic profiling pipelines improve taxonomic classification for 16S amplicon sequencing data
por: Odom, Aubrey R., et al.
Publicado: (2023)

ASVmaker: A New Tool to Improve Taxonomic Identifications for Amplicon Sequencing Data
por: Plessis, Clément, et al.
Publicado: (2023)

Use of universal primers for the 18S ribosomal RNA gene and whole soil DNAs to reveal the taxonomic structures of soil nematodes by high-throughput amplicon sequencing
por: Kenmotsu, Harutaro, et al.
Publicado: (2021)

Accurate multiplexing and filtering for high-throughput amplicon-sequencing
por: Esling, Philippe, et al.
Publicado: (2015)

Human Stressors Are Driving Coastal Benthic Long-Lived Sessile Fan Mussel Pinna nobilis Population Structure More than Environmental Stressors
por: Deudero, Salud, et al.
Publicado: (2015)

AmpliconDuo: A Split-Sample Filtering Protocol for High-Throughput Amplicon Sequencing of Microbial Communities
por: Lange, Anja, et al.
Publicado: (2015)

Describing and understanding behavioral responses to multiple stressors and multiple stimuli
por: Hale, Robin, et al.
Publicado: (2016)

Taxonomic Assessment of Rumen Microbiota Using Total RNA and Targeted Amplicon Sequencing Approaches
por: Li, Fuyong, et al.
Publicado: (2016)

Taxonomic and Numerical Resolutions of Nepomorpha (Insecta: Heteroptera) in Cerrado Streams
por: Giehl, Nubia França da Silva, et al.
Publicado: (2014)

Seagrass Colonization Alters Diversity, Abundance, Taxonomic, and Functional Community Structure of Benthic Microbial Eukaryotes
por: Pan, Ying, et al.
Publicado: (2022)

NG-Tax 2.0: A Semantic Framework for High-Throughput Amplicon Analysis
por: Poncheewin, Wasin, et al.
Publicado: (2020)

High-throughput sequencing of multiple amplicons for barcoding and integrative taxonomy
por: Cruaud, Perrine, et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_ugm3lgsq036g2a78i6mfmccpn8