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Discovery and evolution of novel hemerythrin genes in annelid worms
BACKGROUND: Despite extensive study on hemoglobins and hemocyanins, little is known about hemerythrin (Hr) evolutionary history. Four subgroups of Hrs have been documented, including: circulating Hr (cHr), myohemerythrin (myoHr), ovohemerythrin (ovoHr), and neurohemerythrin (nHr). Annelids have the...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5363010/ https://www.ncbi.nlm.nih.gov/pubmed/28330441 http://dx.doi.org/10.1186/s12862-017-0933-z |
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author | Costa-Paiva, Elisa M. Whelan, Nathan V. Waits, Damien S. Santos, Scott R. Schrago, Carlos G. Halanych, Kenneth M. |
author_facet | Costa-Paiva, Elisa M. Whelan, Nathan V. Waits, Damien S. Santos, Scott R. Schrago, Carlos G. Halanych, Kenneth M. |
author_sort | Costa-Paiva, Elisa M. |
collection | PubMed |
description | BACKGROUND: Despite extensive study on hemoglobins and hemocyanins, little is known about hemerythrin (Hr) evolutionary history. Four subgroups of Hrs have been documented, including: circulating Hr (cHr), myohemerythrin (myoHr), ovohemerythrin (ovoHr), and neurohemerythrin (nHr). Annelids have the greatest diversity of oxygen carrying proteins among animals and are the only phylum in which all Hr subgroups have been documented. To examine Hr diversity in annelids and to further understand evolution of Hrs, we employed approaches to survey annelid transcriptomes in silico. RESULTS: Sequences of 214 putative Hr genes were identified from 44 annelid species in 40 different families and Bayesian inference revealed two major clades with strong statistical support. Notably, the topology of the Hr gene tree did not mirror the phylogeny of Annelida as presently understood, and we found evidence of extensive Hr gene duplication and loss in annelids. Gene tree topology supported monophyly of cHrs and a myoHr clade that included nHrs sequences, indicating these designations are functional rather than evolutionary. CONCLUSIONS: The presence of several cHrs in early branching taxa suggests that a variety of Hrs were present in the common ancestor of extant annelids. Although our analysis was limited to expressed-coding regions, our findings demonstrate a greater diversity of Hrs among annelids than previously reported. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12862-017-0933-z) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-5363010 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-53630102017-03-24 Discovery and evolution of novel hemerythrin genes in annelid worms Costa-Paiva, Elisa M. Whelan, Nathan V. Waits, Damien S. Santos, Scott R. Schrago, Carlos G. Halanych, Kenneth M. BMC Evol Biol Research Article BACKGROUND: Despite extensive study on hemoglobins and hemocyanins, little is known about hemerythrin (Hr) evolutionary history. Four subgroups of Hrs have been documented, including: circulating Hr (cHr), myohemerythrin (myoHr), ovohemerythrin (ovoHr), and neurohemerythrin (nHr). Annelids have the greatest diversity of oxygen carrying proteins among animals and are the only phylum in which all Hr subgroups have been documented. To examine Hr diversity in annelids and to further understand evolution of Hrs, we employed approaches to survey annelid transcriptomes in silico. RESULTS: Sequences of 214 putative Hr genes were identified from 44 annelid species in 40 different families and Bayesian inference revealed two major clades with strong statistical support. Notably, the topology of the Hr gene tree did not mirror the phylogeny of Annelida as presently understood, and we found evidence of extensive Hr gene duplication and loss in annelids. Gene tree topology supported monophyly of cHrs and a myoHr clade that included nHrs sequences, indicating these designations are functional rather than evolutionary. CONCLUSIONS: The presence of several cHrs in early branching taxa suggests that a variety of Hrs were present in the common ancestor of extant annelids. Although our analysis was limited to expressed-coding regions, our findings demonstrate a greater diversity of Hrs among annelids than previously reported. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12862-017-0933-z) contains supplementary material, which is available to authorized users. BioMed Central 2017-03-23 /pmc/articles/PMC5363010/ /pubmed/28330441 http://dx.doi.org/10.1186/s12862-017-0933-z Text en © The Author(s). 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Article Costa-Paiva, Elisa M. Whelan, Nathan V. Waits, Damien S. Santos, Scott R. Schrago, Carlos G. Halanych, Kenneth M. Discovery and evolution of novel hemerythrin genes in annelid worms |
title | Discovery and evolution of novel hemerythrin genes in annelid worms |
title_full | Discovery and evolution of novel hemerythrin genes in annelid worms |
title_fullStr | Discovery and evolution of novel hemerythrin genes in annelid worms |
title_full_unstemmed | Discovery and evolution of novel hemerythrin genes in annelid worms |
title_short | Discovery and evolution of novel hemerythrin genes in annelid worms |
title_sort | discovery and evolution of novel hemerythrin genes in annelid worms |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5363010/ https://www.ncbi.nlm.nih.gov/pubmed/28330441 http://dx.doi.org/10.1186/s12862-017-0933-z |
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