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The preservation of microbial DNA in archived soils of various genetic types

This study is a comparative analysis of samples of archived (stored for over 70–90 years) and modern soils of two different genetic types–chernozem and sod-podzolic soils. We revealed a reduction in biodiversity of archived soils relative to their modern state. Particularly, long-term storage in the...

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Autores principales: Ivanova, Ekaterina A., Korvigo, Ilia O., Aparin, Boris F., Chirak, Evgenii L., Pershina, Elizaveta V., Romaschenko, Nikolay S., Provorov, Nikolai A., Andronov, Evgeny E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5365134/
https://www.ncbi.nlm.nih.gov/pubmed/28339464
http://dx.doi.org/10.1371/journal.pone.0173901
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author Ivanova, Ekaterina A.
Korvigo, Ilia O.
Aparin, Boris F.
Chirak, Evgenii L.
Pershina, Elizaveta V.
Romaschenko, Nikolay S.
Provorov, Nikolai A.
Andronov, Evgeny E.
author_facet Ivanova, Ekaterina A.
Korvigo, Ilia O.
Aparin, Boris F.
Chirak, Evgenii L.
Pershina, Elizaveta V.
Romaschenko, Nikolay S.
Provorov, Nikolai A.
Andronov, Evgeny E.
author_sort Ivanova, Ekaterina A.
collection PubMed
description This study is a comparative analysis of samples of archived (stored for over 70–90 years) and modern soils of two different genetic types–chernozem and sod-podzolic soils. We revealed a reduction in biodiversity of archived soils relative to their modern state. Particularly, long-term storage in the museum exerted a greater impact on the microbiomes of sod-podzolic soils, while chernozem samples better preserved the native community. Thus, the persistence of microbial DNA in soil is largely determined by the physico-chemical characteristics that differ across soil types. Chernozems create better conditions for the long-term DNA preservation than sod-podzolic soils. This results in supposedly higher levels of biodiversity conservation in the microbiomes of chernozem with preservation of major microbial taxa dominant in the modern (control) soil samples, which makes archived chernozems a promising object for paleosoil studies.
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spelling pubmed-53651342017-04-06 The preservation of microbial DNA in archived soils of various genetic types Ivanova, Ekaterina A. Korvigo, Ilia O. Aparin, Boris F. Chirak, Evgenii L. Pershina, Elizaveta V. Romaschenko, Nikolay S. Provorov, Nikolai A. Andronov, Evgeny E. PLoS One Research Article This study is a comparative analysis of samples of archived (stored for over 70–90 years) and modern soils of two different genetic types–chernozem and sod-podzolic soils. We revealed a reduction in biodiversity of archived soils relative to their modern state. Particularly, long-term storage in the museum exerted a greater impact on the microbiomes of sod-podzolic soils, while chernozem samples better preserved the native community. Thus, the persistence of microbial DNA in soil is largely determined by the physico-chemical characteristics that differ across soil types. Chernozems create better conditions for the long-term DNA preservation than sod-podzolic soils. This results in supposedly higher levels of biodiversity conservation in the microbiomes of chernozem with preservation of major microbial taxa dominant in the modern (control) soil samples, which makes archived chernozems a promising object for paleosoil studies. Public Library of Science 2017-03-24 /pmc/articles/PMC5365134/ /pubmed/28339464 http://dx.doi.org/10.1371/journal.pone.0173901 Text en © 2017 Ivanova et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Ivanova, Ekaterina A.
Korvigo, Ilia O.
Aparin, Boris F.
Chirak, Evgenii L.
Pershina, Elizaveta V.
Romaschenko, Nikolay S.
Provorov, Nikolai A.
Andronov, Evgeny E.
The preservation of microbial DNA in archived soils of various genetic types
title The preservation of microbial DNA in archived soils of various genetic types
title_full The preservation of microbial DNA in archived soils of various genetic types
title_fullStr The preservation of microbial DNA in archived soils of various genetic types
title_full_unstemmed The preservation of microbial DNA in archived soils of various genetic types
title_short The preservation of microbial DNA in archived soils of various genetic types
title_sort preservation of microbial dna in archived soils of various genetic types
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5365134/
https://www.ncbi.nlm.nih.gov/pubmed/28339464
http://dx.doi.org/10.1371/journal.pone.0173901
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