Cargando…
A Proteomic Perspective on the Bacterial Adaptation to Cold: Integrating OMICs Data of the Psychrotrophic Bacterium Exiguobacterium antarcticum B7
Since the publication of one of the first studies using 2D gel electrophoresis by Patrick H. O’Farrell in 1975, several other studies have used that method to evaluate cellular responses to different physicochemical variations. In environmental microbiology, bacterial adaptation to cold environments...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2017
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5372230/ https://www.ncbi.nlm.nih.gov/pubmed/28248259 http://dx.doi.org/10.3390/proteomes5010009 |
_version_ | 1782518575881256960 |
---|---|
author | Baraúna, Rafael A. Freitas, Dhara Y. Pinheiro, Juliana C. Folador, Adriana R. C. Silva, Artur |
author_facet | Baraúna, Rafael A. Freitas, Dhara Y. Pinheiro, Juliana C. Folador, Adriana R. C. Silva, Artur |
author_sort | Baraúna, Rafael A. |
collection | PubMed |
description | Since the publication of one of the first studies using 2D gel electrophoresis by Patrick H. O’Farrell in 1975, several other studies have used that method to evaluate cellular responses to different physicochemical variations. In environmental microbiology, bacterial adaptation to cold environments is a “hot topic” because of its application in biotechnological processes. As in other fields, gel-based and gel-free proteomic methods have been used to determine the molecular mechanisms of adaptation to cold of several psychrotrophic and psychrophilic bacterial species. In this review, we aim to describe and discuss these main molecular mechanisms of cold adaptation, referencing proteomic studies that have made significant contributions to our current knowledge in the area. Furthermore, we use Exiguobacterium antarcticum B7 as a model organism to present the importance of integrating genomic, transcriptomic, and proteomic data. This species has been isolated in Antarctica and previously studied at all three omic levels. The integration of these data permitted more robust conclusions about the mechanisms of bacterial adaptation to cold. |
format | Online Article Text |
id | pubmed-5372230 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-53722302017-04-05 A Proteomic Perspective on the Bacterial Adaptation to Cold: Integrating OMICs Data of the Psychrotrophic Bacterium Exiguobacterium antarcticum B7 Baraúna, Rafael A. Freitas, Dhara Y. Pinheiro, Juliana C. Folador, Adriana R. C. Silva, Artur Proteomes Review Since the publication of one of the first studies using 2D gel electrophoresis by Patrick H. O’Farrell in 1975, several other studies have used that method to evaluate cellular responses to different physicochemical variations. In environmental microbiology, bacterial adaptation to cold environments is a “hot topic” because of its application in biotechnological processes. As in other fields, gel-based and gel-free proteomic methods have been used to determine the molecular mechanisms of adaptation to cold of several psychrotrophic and psychrophilic bacterial species. In this review, we aim to describe and discuss these main molecular mechanisms of cold adaptation, referencing proteomic studies that have made significant contributions to our current knowledge in the area. Furthermore, we use Exiguobacterium antarcticum B7 as a model organism to present the importance of integrating genomic, transcriptomic, and proteomic data. This species has been isolated in Antarctica and previously studied at all three omic levels. The integration of these data permitted more robust conclusions about the mechanisms of bacterial adaptation to cold. MDPI 2017-02-23 /pmc/articles/PMC5372230/ /pubmed/28248259 http://dx.doi.org/10.3390/proteomes5010009 Text en © 2017 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Review Baraúna, Rafael A. Freitas, Dhara Y. Pinheiro, Juliana C. Folador, Adriana R. C. Silva, Artur A Proteomic Perspective on the Bacterial Adaptation to Cold: Integrating OMICs Data of the Psychrotrophic Bacterium Exiguobacterium antarcticum B7 |
title | A Proteomic Perspective on the Bacterial Adaptation to Cold: Integrating OMICs Data of the Psychrotrophic Bacterium Exiguobacterium antarcticum B7 |
title_full | A Proteomic Perspective on the Bacterial Adaptation to Cold: Integrating OMICs Data of the Psychrotrophic Bacterium Exiguobacterium antarcticum B7 |
title_fullStr | A Proteomic Perspective on the Bacterial Adaptation to Cold: Integrating OMICs Data of the Psychrotrophic Bacterium Exiguobacterium antarcticum B7 |
title_full_unstemmed | A Proteomic Perspective on the Bacterial Adaptation to Cold: Integrating OMICs Data of the Psychrotrophic Bacterium Exiguobacterium antarcticum B7 |
title_short | A Proteomic Perspective on the Bacterial Adaptation to Cold: Integrating OMICs Data of the Psychrotrophic Bacterium Exiguobacterium antarcticum B7 |
title_sort | proteomic perspective on the bacterial adaptation to cold: integrating omics data of the psychrotrophic bacterium exiguobacterium antarcticum b7 |
topic | Review |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5372230/ https://www.ncbi.nlm.nih.gov/pubmed/28248259 http://dx.doi.org/10.3390/proteomes5010009 |
work_keys_str_mv | AT baraunarafaela aproteomicperspectiveonthebacterialadaptationtocoldintegratingomicsdataofthepsychrotrophicbacteriumexiguobacteriumantarcticumb7 AT freitasdharay aproteomicperspectiveonthebacterialadaptationtocoldintegratingomicsdataofthepsychrotrophicbacteriumexiguobacteriumantarcticumb7 AT pinheirojulianac aproteomicperspectiveonthebacterialadaptationtocoldintegratingomicsdataofthepsychrotrophicbacteriumexiguobacteriumantarcticumb7 AT foladoradrianarc aproteomicperspectiveonthebacterialadaptationtocoldintegratingomicsdataofthepsychrotrophicbacteriumexiguobacteriumantarcticumb7 AT silvaartur aproteomicperspectiveonthebacterialadaptationtocoldintegratingomicsdataofthepsychrotrophicbacteriumexiguobacteriumantarcticumb7 AT baraunarafaela proteomicperspectiveonthebacterialadaptationtocoldintegratingomicsdataofthepsychrotrophicbacteriumexiguobacteriumantarcticumb7 AT freitasdharay proteomicperspectiveonthebacterialadaptationtocoldintegratingomicsdataofthepsychrotrophicbacteriumexiguobacteriumantarcticumb7 AT pinheirojulianac proteomicperspectiveonthebacterialadaptationtocoldintegratingomicsdataofthepsychrotrophicbacteriumexiguobacteriumantarcticumb7 AT foladoradrianarc proteomicperspectiveonthebacterialadaptationtocoldintegratingomicsdataofthepsychrotrophicbacteriumexiguobacteriumantarcticumb7 AT silvaartur proteomicperspectiveonthebacterialadaptationtocoldintegratingomicsdataofthepsychrotrophicbacteriumexiguobacteriumantarcticumb7 |