Cargando…

Power Analysis of Single Cell RNA-Sequencing Experiments

Single cell RNA sequencing (scRNA-seq) has become an established and powerful method to investigate transcriptomic cell-to-cell variation, revealing new cell types, and providing insights into developmental processes and transcriptional stochasticity. The array of published scRNA-seq protocols allow...

Descripción completa

Detalles Bibliográficos
Autores principales:	Svensson, Valentine, Natarajan, Kedar Nath, Ly, Lam-Ha, Miragaia, Ricardo J, Labalette, Charlotte, Macaulay, Iain C, Cvejic, Ana, Teichmann, Sarah A
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	2017
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5376499/ https://www.ncbi.nlm.nih.gov/pubmed/28263961 http://dx.doi.org/10.1038/nmeth.4220

Ejemplares similares

Single-Cell RNA-Sequencing Reveals a Continuous Spectrum of Differentiation in Hematopoietic Cells
por: Macaulay, Iain C., et al.
Publicado: (2016)

A rapid and robust method for single cell chromatin accessibility profiling
por: Chen, Xi, et al.
Publicado: (2018)

Single-cell transcriptome analysis of fish immune cells provides insight into the evolution of vertebrate immune cell types
por: Carmona, Santiago J., et al.
Publicado: (2017)

Single-cell RNA-sequencing resolves self-antigen expression during mTEC development
por: Miragaia, Ricardo J., et al.
Publicado: (2018)

Comparative analysis of sequencing technologies for single-cell transcriptomics
por: Natarajan, Kedar Nath, et al.
Publicado: (2019)

Single Cell Gene Expression to Understand the Dynamic Architecture of the Heart
por: Massaia, Andrea, et al.
Publicado: (2018)

Single-cell transcriptomics identifies CD44 as a marker and regulator of endothelial to haematopoietic transition
por: Oatley, Morgan, et al.
Publicado: (2020)

SpatialDE: identification of spatially variable genes
por: Svensson, Valentine, et al.
Publicado: (2018)

Single-cell analysis of CD4+ T-cell differentiation reveals three major cell states and progressive acceleration of proliferation
por: Proserpio, Valentina, et al.
Publicado: (2016)

MERVL/Zscan4 Network Activation Results in Transient Genome-wide DNA Demethylation of mESCs
por: Eckersley-Maslin, Mélanie A., et al.
Publicado: (2016)

Computational approaches for interpreting scRNA‐seq data
por: Rostom, Raghd, et al.
Publicado: (2017)

Single Cell RNA-Sequencing of Pluripotent States Unlocks Modular Transcriptional Variation
por: Kolodziejczyk, Aleksandra A., et al.
Publicado: (2015)

Flipping between Polycomb repressed and active transcriptional states introduces noise in gene expression
por: Kar, Gozde, et al.
Publicado: (2017)

Application of single-cell RNA sequencing methodologies in understanding haematopoiesis and immunology
por: Ranzoni, Anna M., et al.
Publicado: (2019)

Analysis of single-cell RNA sequencing data based on autoencoders
por: Tangherloni, Andrea, et al.
Publicado: (2021)

Erratum to: Single cell analysis of CD4+ T cell differentiation reveals three major cell states and progressive acceleration of proliferation
por: Proserpio, Valentina, et al.
Publicado: (2016)

Predicting gene regulatory networks from cell atlases
por: Møller, Andreas Fønss, et al.
Publicado: (2020)

Distinctive features of lincRNA gene expression suggest widespread RNA-independent functions
por: Tuck, Alex C, et al.
Publicado: (2018)

Protein velocity and acceleration from single-cell multiomics experiments
por: Gorin, Gennady, et al.
Publicado: (2020)

Are cells from a snowman realistic? Cryopreserved tissues as a source for single-cell RNA-sequencing experiments
por: Vieira Braga, Felipe A., et al.
Publicado: (2017)

Single Cell Genomics: Advances and Future Perspectives
por: Macaulay, Iain C., et al.
Publicado: (2014)

Factors Contributing to the Evolution of mecA-Mediated β-lactam Resistance in Staphylococci: Update and New Insights From Whole Genome Sequencing (WGS)
por: Miragaia, Maria
Publicado: (2018)

Single-cell RNA-sequencing uncovers transcriptional states and fate decisions in haematopoiesis
por: Athanasiadis, Emmanouil I., et al.
Publicado: (2017)

Single-Cell Transcriptomics of Regulatory T Cells Reveals Trajectories of Tissue Adaptation
por: Miragaia, Ricardo J., et al.
Publicado: (2019)

Single-Cell Multiomics: Multiple Measurements from Single Cells
por: Macaulay, Iain C., et al.
Publicado: (2017)

A practical guide to single-cell RNA-sequencing for biomedical research and clinical applications
por: Haque, Ashraful, et al.
Publicado: (2017)

SMaSH: a scalable, general marker gene identification framework for single-cell RNA-sequencing
por: Nelson, M. E., et al.
Publicado: (2022)

Matching queried single-cell open-chromatin profiles to large pools of single-cell transcriptomes and epigenomes for reference supported analysis
por: Mishra, Shreya, et al.
Publicado: (2023)

Effect of imputation on gene network reconstruction from single-cell RNA-seq data
por: Ly, Lam-Ha, et al.
Publicado: (2021)

Genome-wide CRISPR Screens in T Helper Cells Reveal Pervasive Crosstalk between Activation and Differentiation
por: Henriksson, Johan, et al.
Publicado: (2019)

Impact of Insertion Sequences and Recombination on the Population Structure of Staphylococcus haemolyticus
por: Bouchami, Ons, et al.
Publicado: (2016)

An atlas of mouse CD4(+) T cell transcriptomes
por: Stubbington, Michael JT, et al.
Publicado: (2015)

Defining Cell Identity with Single‐Cell Omics
por: Mincarelli, Laura, et al.
Publicado: (2018)

Single cell transcriptomics comes of age
por: Aldridge, Sarah, et al.
Publicado: (2020)

Single-cell genomics: coming of age
por: Linnarsson, Sten, et al.
Publicado: (2016)

Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression
por: Cuomo, Anna S. E., et al.
Publicado: (2020)

Dissecting human disease with single-cell omics: application in model systems and in the clinic
por: Strzelecka, Paulina M., et al.
Publicado: (2018)

A curated database reveals trends in single-cell transcriptomics
por: Svensson, Valentine, et al.
Publicado: (2020)

Parallel single-cell sequencing links transcriptional and epigenetic heterogeneity
por: Angermueller, Christof, et al.
Publicado: (2016)

Publisher Correction: Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression
por: Cuomo, Anna S. E., et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_7ibaladj1p56toemhhnlo9398l