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Elevated Air Humidity Changes Soil Bacterial Community Structure in the Silver Birch Stand

Soil microbes play a fundamental role in forest ecosystems and respond rapidly to changes in the environment. Simultaneously with the temperature increase the climate change scenarios also predict an intensified hydrological cycle for the Baltic Sea runoff region. The aim of this study was to assess...

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Autores principales: Truu, Marika, Ostonen, Ivika, Preem, Jens-Konrad, Lõhmus, Krista, Nõlvak, Hiie, Ligi, Teele, Rosenvald, Katrin, Parts, Kaarin, Kupper, Priit, Truu, Jaak
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5376589/
https://www.ncbi.nlm.nih.gov/pubmed/28421053
http://dx.doi.org/10.3389/fmicb.2017.00557
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author Truu, Marika
Ostonen, Ivika
Preem, Jens-Konrad
Lõhmus, Krista
Nõlvak, Hiie
Ligi, Teele
Rosenvald, Katrin
Parts, Kaarin
Kupper, Priit
Truu, Jaak
author_facet Truu, Marika
Ostonen, Ivika
Preem, Jens-Konrad
Lõhmus, Krista
Nõlvak, Hiie
Ligi, Teele
Rosenvald, Katrin
Parts, Kaarin
Kupper, Priit
Truu, Jaak
author_sort Truu, Marika
collection PubMed
description Soil microbes play a fundamental role in forest ecosystems and respond rapidly to changes in the environment. Simultaneously with the temperature increase the climate change scenarios also predict an intensified hydrological cycle for the Baltic Sea runoff region. The aim of this study was to assess the effect of elevated air humidity on the top soil microbial community structure of a silver birch (Betula pendula Roth.) stand by using a free air humidity manipulation facility (FAHM). The bacterial community structures of bulk soil and birch rhizosphere were analyzed using high-throughput sequencing of bacteria-specific16S rRNA gene fragments and quantification of denitrification related genes. The increased air humidity altered both bulk soil and rhizosphere bacterial community structures, and changes in the bacterial communities initiated by elevated air humidity were related to modified soil abiotic and biotic variables. Network analysis revealed that variation in soil bacterial community structural units is explained by altered abiotic conditions such as increased pH value in bulk soil, while in rhizosphere the change in absorptive root morphology had a higher effect. Among root morphological traits, the absorptive root diameter was strongest related to the bacterial community structure. The changes in bacterial community structures under elevated air humidity are associated with shifts in C, N, and P turnover as well as mineral weathering processes in soil. Increased air humidity decreased the nir and nosZ gene abundance in the rhizosphere bacterial community. The potential contribution of the denitrification to the N(2)O emission was not affected by the elevated air humidity in birch stand soil. In addition, the study revealed a strong link between the bacterial community structure, abundance of denitrification related genes, and birch absorptive root morphology in the ecosystem system adaptation to elevated air humidity.
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spelling pubmed-53765892017-04-18 Elevated Air Humidity Changes Soil Bacterial Community Structure in the Silver Birch Stand Truu, Marika Ostonen, Ivika Preem, Jens-Konrad Lõhmus, Krista Nõlvak, Hiie Ligi, Teele Rosenvald, Katrin Parts, Kaarin Kupper, Priit Truu, Jaak Front Microbiol Microbiology Soil microbes play a fundamental role in forest ecosystems and respond rapidly to changes in the environment. Simultaneously with the temperature increase the climate change scenarios also predict an intensified hydrological cycle for the Baltic Sea runoff region. The aim of this study was to assess the effect of elevated air humidity on the top soil microbial community structure of a silver birch (Betula pendula Roth.) stand by using a free air humidity manipulation facility (FAHM). The bacterial community structures of bulk soil and birch rhizosphere were analyzed using high-throughput sequencing of bacteria-specific16S rRNA gene fragments and quantification of denitrification related genes. The increased air humidity altered both bulk soil and rhizosphere bacterial community structures, and changes in the bacterial communities initiated by elevated air humidity were related to modified soil abiotic and biotic variables. Network analysis revealed that variation in soil bacterial community structural units is explained by altered abiotic conditions such as increased pH value in bulk soil, while in rhizosphere the change in absorptive root morphology had a higher effect. Among root morphological traits, the absorptive root diameter was strongest related to the bacterial community structure. The changes in bacterial community structures under elevated air humidity are associated with shifts in C, N, and P turnover as well as mineral weathering processes in soil. Increased air humidity decreased the nir and nosZ gene abundance in the rhizosphere bacterial community. The potential contribution of the denitrification to the N(2)O emission was not affected by the elevated air humidity in birch stand soil. In addition, the study revealed a strong link between the bacterial community structure, abundance of denitrification related genes, and birch absorptive root morphology in the ecosystem system adaptation to elevated air humidity. Frontiers Media S.A. 2017-04-03 /pmc/articles/PMC5376589/ /pubmed/28421053 http://dx.doi.org/10.3389/fmicb.2017.00557 Text en Copyright © 2017 Truu, Ostonen, Preem, Lõhmus, Nõlvak, Ligi, Rosenvald, Parts, Kupper and Truu. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Truu, Marika
Ostonen, Ivika
Preem, Jens-Konrad
Lõhmus, Krista
Nõlvak, Hiie
Ligi, Teele
Rosenvald, Katrin
Parts, Kaarin
Kupper, Priit
Truu, Jaak
Elevated Air Humidity Changes Soil Bacterial Community Structure in the Silver Birch Stand
title Elevated Air Humidity Changes Soil Bacterial Community Structure in the Silver Birch Stand
title_full Elevated Air Humidity Changes Soil Bacterial Community Structure in the Silver Birch Stand
title_fullStr Elevated Air Humidity Changes Soil Bacterial Community Structure in the Silver Birch Stand
title_full_unstemmed Elevated Air Humidity Changes Soil Bacterial Community Structure in the Silver Birch Stand
title_short Elevated Air Humidity Changes Soil Bacterial Community Structure in the Silver Birch Stand
title_sort elevated air humidity changes soil bacterial community structure in the silver birch stand
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5376589/
https://www.ncbi.nlm.nih.gov/pubmed/28421053
http://dx.doi.org/10.3389/fmicb.2017.00557
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