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Application of visible and near-infrared spectroscopy to classification of Miscanthus species

The feasibility of visible and near infrared (NIR) spectroscopy as tool to classify Miscanthus samples was explored in this study. Three types of Miscanthus plants, namely, M. sinensis, M. sacchariflorus and M. fIoridulus, were analyzed using a NIR spectrophotometer. Several classification models ba...

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Autores principales: Jin, Xiaoli, Chen, Xiaoling, Xiao, Liang, Shi, Chunhai, Chen, Liang, Yu, Bin, Yi, Zili, Yoo, Ji Hye, Heo, Kweon, Yu, Chang Yeon, Yamada, Toshihiko, Sacks, Erik J., Peng, Junhua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5378329/
https://www.ncbi.nlm.nih.gov/pubmed/28369059
http://dx.doi.org/10.1371/journal.pone.0171360
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author Jin, Xiaoli
Chen, Xiaoling
Xiao, Liang
Shi, Chunhai
Chen, Liang
Yu, Bin
Yi, Zili
Yoo, Ji Hye
Heo, Kweon
Yu, Chang Yeon
Yamada, Toshihiko
Sacks, Erik J.
Peng, Junhua
author_facet Jin, Xiaoli
Chen, Xiaoling
Xiao, Liang
Shi, Chunhai
Chen, Liang
Yu, Bin
Yi, Zili
Yoo, Ji Hye
Heo, Kweon
Yu, Chang Yeon
Yamada, Toshihiko
Sacks, Erik J.
Peng, Junhua
author_sort Jin, Xiaoli
collection PubMed
description The feasibility of visible and near infrared (NIR) spectroscopy as tool to classify Miscanthus samples was explored in this study. Three types of Miscanthus plants, namely, M. sinensis, M. sacchariflorus and M. fIoridulus, were analyzed using a NIR spectrophotometer. Several classification models based on the NIR spectra data were developed using line discriminated analysis (LDA), partial least squares (PLS), least squares support vector machine regression (LSSVR), radial basis function (RBF) and neural network (NN). The principal component analysis (PCA) presented rough classification with overlapping samples, while the models of Line_LSSVR, RBF_LSSVR and RBF_NN presented almost same calibration and validation results. Due to the higher speed of Line_LSSVR than RBF_LSSVR and RBF_NN, we selected the line_LSSVR model as a representative. In our study, the model based on line_LSSVR showed higher accuracy than LDA and PLS models. The total correct classification rates of 87.79 and 96.51% were observed based on LDA and PLS model in the testing set, respectively, while the line_LSSVR showed 99.42% of total correct classification rate. Meanwhile, the lin_LSSVR model in the testing set showed correct classification rate of 100, 100 and 96.77% for M. sinensis, M. sacchariflorus and M. fIoridulus, respectively. The lin_LSSVR model assigned 99.42% of samples to the right groups, except one M. fIoridulus sample. The results demonstrated that NIR spectra combined with a preliminary morphological classification could be an effective and reliable procedure for the classification of Miscanthus species.
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spelling pubmed-53783292017-04-07 Application of visible and near-infrared spectroscopy to classification of Miscanthus species Jin, Xiaoli Chen, Xiaoling Xiao, Liang Shi, Chunhai Chen, Liang Yu, Bin Yi, Zili Yoo, Ji Hye Heo, Kweon Yu, Chang Yeon Yamada, Toshihiko Sacks, Erik J. Peng, Junhua PLoS One Research Article The feasibility of visible and near infrared (NIR) spectroscopy as tool to classify Miscanthus samples was explored in this study. Three types of Miscanthus plants, namely, M. sinensis, M. sacchariflorus and M. fIoridulus, were analyzed using a NIR spectrophotometer. Several classification models based on the NIR spectra data were developed using line discriminated analysis (LDA), partial least squares (PLS), least squares support vector machine regression (LSSVR), radial basis function (RBF) and neural network (NN). The principal component analysis (PCA) presented rough classification with overlapping samples, while the models of Line_LSSVR, RBF_LSSVR and RBF_NN presented almost same calibration and validation results. Due to the higher speed of Line_LSSVR than RBF_LSSVR and RBF_NN, we selected the line_LSSVR model as a representative. In our study, the model based on line_LSSVR showed higher accuracy than LDA and PLS models. The total correct classification rates of 87.79 and 96.51% were observed based on LDA and PLS model in the testing set, respectively, while the line_LSSVR showed 99.42% of total correct classification rate. Meanwhile, the lin_LSSVR model in the testing set showed correct classification rate of 100, 100 and 96.77% for M. sinensis, M. sacchariflorus and M. fIoridulus, respectively. The lin_LSSVR model assigned 99.42% of samples to the right groups, except one M. fIoridulus sample. The results demonstrated that NIR spectra combined with a preliminary morphological classification could be an effective and reliable procedure for the classification of Miscanthus species. Public Library of Science 2017-04-03 /pmc/articles/PMC5378329/ /pubmed/28369059 http://dx.doi.org/10.1371/journal.pone.0171360 Text en © 2017 Jin et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Jin, Xiaoli
Chen, Xiaoling
Xiao, Liang
Shi, Chunhai
Chen, Liang
Yu, Bin
Yi, Zili
Yoo, Ji Hye
Heo, Kweon
Yu, Chang Yeon
Yamada, Toshihiko
Sacks, Erik J.
Peng, Junhua
Application of visible and near-infrared spectroscopy to classification of Miscanthus species
title Application of visible and near-infrared spectroscopy to classification of Miscanthus species
title_full Application of visible and near-infrared spectroscopy to classification of Miscanthus species
title_fullStr Application of visible and near-infrared spectroscopy to classification of Miscanthus species
title_full_unstemmed Application of visible and near-infrared spectroscopy to classification of Miscanthus species
title_short Application of visible and near-infrared spectroscopy to classification of Miscanthus species
title_sort application of visible and near-infrared spectroscopy to classification of miscanthus species
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5378329/
https://www.ncbi.nlm.nih.gov/pubmed/28369059
http://dx.doi.org/10.1371/journal.pone.0171360
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