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Signatures of a macroscopic switching transition for a dynamic microtubule

Characterising complex kinetics of non-equilibrium self-assembly of bio-filaments is of general interest. Dynamic instability in microtubules, consisting of successive catastrophes and rescues, is observed to occur as a result of the non-equilibrium conversion of GTP-tubulin to GDP-tubulin. We study...

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Autores principales: Aparna, J. S., Padinhateeri, Ranjith, Das, Dibyendu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5379563/
https://www.ncbi.nlm.nih.gov/pubmed/28374844
http://dx.doi.org/10.1038/srep45747
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author Aparna, J. S.
Padinhateeri, Ranjith
Das, Dibyendu
author_facet Aparna, J. S.
Padinhateeri, Ranjith
Das, Dibyendu
author_sort Aparna, J. S.
collection PubMed
description Characterising complex kinetics of non-equilibrium self-assembly of bio-filaments is of general interest. Dynamic instability in microtubules, consisting of successive catastrophes and rescues, is observed to occur as a result of the non-equilibrium conversion of GTP-tubulin to GDP-tubulin. We study this phenomenon using a model for microtubule kinetics with GTP/GDP state-dependent polymerisation, depolymerisation and hydrolysis of subunits. Our results reveal a sharp switch-like transition in the mean velocity of the filaments, from a growth phase to a shrinkage phase, with an associated co-existence of the two phases. This transition is reminiscent of the discontinuous phase transition across the liquid-gas boundary. We probe the extent of discontinuity in the transition quantitatively using characteristic signatures such as bimodality in velocity distribution, variance and Binder cumulant, and also hysteresis behaviour of the system. We further investigate ageing behaviour in catastrophes of the filament, and find that the multi-step nature of catastrophes is intensified in the vicinity of the switching transition. This assumes importance in the context of Microtubule Associated Proteins which have the potential of altering kinetic parameter values.
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spelling pubmed-53795632017-04-07 Signatures of a macroscopic switching transition for a dynamic microtubule Aparna, J. S. Padinhateeri, Ranjith Das, Dibyendu Sci Rep Article Characterising complex kinetics of non-equilibrium self-assembly of bio-filaments is of general interest. Dynamic instability in microtubules, consisting of successive catastrophes and rescues, is observed to occur as a result of the non-equilibrium conversion of GTP-tubulin to GDP-tubulin. We study this phenomenon using a model for microtubule kinetics with GTP/GDP state-dependent polymerisation, depolymerisation and hydrolysis of subunits. Our results reveal a sharp switch-like transition in the mean velocity of the filaments, from a growth phase to a shrinkage phase, with an associated co-existence of the two phases. This transition is reminiscent of the discontinuous phase transition across the liquid-gas boundary. We probe the extent of discontinuity in the transition quantitatively using characteristic signatures such as bimodality in velocity distribution, variance and Binder cumulant, and also hysteresis behaviour of the system. We further investigate ageing behaviour in catastrophes of the filament, and find that the multi-step nature of catastrophes is intensified in the vicinity of the switching transition. This assumes importance in the context of Microtubule Associated Proteins which have the potential of altering kinetic parameter values. Nature Publishing Group 2017-04-04 /pmc/articles/PMC5379563/ /pubmed/28374844 http://dx.doi.org/10.1038/srep45747 Text en Copyright © 2017, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Aparna, J. S.
Padinhateeri, Ranjith
Das, Dibyendu
Signatures of a macroscopic switching transition for a dynamic microtubule
title Signatures of a macroscopic switching transition for a dynamic microtubule
title_full Signatures of a macroscopic switching transition for a dynamic microtubule
title_fullStr Signatures of a macroscopic switching transition for a dynamic microtubule
title_full_unstemmed Signatures of a macroscopic switching transition for a dynamic microtubule
title_short Signatures of a macroscopic switching transition for a dynamic microtubule
title_sort signatures of a macroscopic switching transition for a dynamic microtubule
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5379563/
https://www.ncbi.nlm.nih.gov/pubmed/28374844
http://dx.doi.org/10.1038/srep45747
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