Cargando…

Using structural knowledge in the protein data bank to inform the search for potential host-microbe protein interactions in sequence space: application to Mycobacterium tuberculosis

BACKGROUND: A comprehensive map of the human-M. tuberculosis (MTB) protein interactome would help fill the gaps in our understanding of the disease, and computational prediction can aid and complement experimental studies towards this end. Several sequence-based in silico approaches tap the existing...

Descripción completa

Detalles Bibliográficos
Autores principales:	Mahajan, Gaurang, Mande, Shekhar C.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2017
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5379762/ https://www.ncbi.nlm.nih.gov/pubmed/28376709 http://dx.doi.org/10.1186/s12859-017-1550-y

Ejemplares similares

From System-Wide Differential Gene Expression to Perturbed Regulatory Factors: A Combinatorial Approach
por: Mahajan, Gaurang, et al.
Publicado: (2015)

A novel nucleoid-associated protein of Mycobacterium tuberculosis is a sequence homolog of GroEL
por: Basu, Debashree, et al.
Publicado: (2009)

The role of thioredoxin proteins in Mycobacterium tuberculosis probed by proteome-wide target profiling
por: Sugandhi, Sapna, et al.
Publicado: (2023)

Mycobacterium tuberculosis infection of host cells in space and time
por: Bussi, Claudio, et al.
Publicado: (2019)

Expression of fluorescent proteins in Lactobacillus rhamnosus to study host–microbe and microbe–microbe interactions
por: Spacova, Irina, et al.
Publicado: (2017)

Rewiring of Metabolic Network in Mycobacterium tuberculosis During Adaptation to Different Stresses
por: Rizvi, Arshad, et al.
Publicado: (2019)

Game theory applications in host-microbe interactions toward disease manifestation: Mycobacterium tuberculosis infection as an example
por: Sharebiani, Hiva, et al.
Publicado: (2021)

Understanding the role of interactions between host and Mycobacterium tuberculosis under hypoxic condition: an in silico approach
por: Bose, Tungadri, et al.
Publicado: (2018)

Multiple transcription factors co-regulate the Mycobacterium tuberculosis adaptation response to vitamin C
por: Nandi, Malobi, et al.
Publicado: (2019)

Genetic characterization of Mycobacterium tuberculosis in the West Bank, Palestinian Territories
por: Ereqat, Suheir, et al.
Publicado: (2012)

Identification of Host Proteins Predictive of Early Stage Mycobacterium tuberculosis Infection
por: Bark, Charles M., et al.
Publicado: (2017)

Mycobacterium tuberculosis Uses Mce Proteins to Interfere With Host Cell Signaling
por: Fenn, Katherine, et al.
Publicado: (2020)

CoRNeA: A Pipeline to Decrypt the Inter-Protein Interfaces from Amino Acid Sequence Information
por: Chopra, Kriti, et al.
Publicado: (2020)

Real time structural search of the Protein Data Bank
por: Guzenko, Dmytro, et al.
Publicado: (2020)

Rhodococcus erythropolis as a host for expression, secretion and glycosylation of Mycobacterium tuberculosis proteins
por: Vallecillo, Antonio J., et al.
Publicado: (2017)

A Mycobacterium tuberculosis surface protein recruits ubiquitin to trigger host xenophagy
por: Chai, Qiyao, et al.
Publicado: (2019)

Host Cell Targets of Released Lipid and Secreted Protein Effectors of Mycobacterium tuberculosis
por: Augenstreich, Jacques, et al.
Publicado: (2020)

Mycobacterium tuberculosis and the host response
por: Kaufmann, Stefan H.E., et al.
Publicado: (2005)

Prediction of host - pathogen protein interactions between Mycobacterium tuberculosis and Homo sapiens using sequence motifs
por: Huo, Tong, et al.
Publicado: (2015)

Bactericidal Permeability-Increasing Proteins Shape Host-Microbe Interactions
por: Chen, Fangmin, et al.
Publicado: (2017)

Functional diversity of staphylococcal surface proteins at the host-microbe interface
por: Schwermann, Nicoletta, et al.
Publicado: (2023)

Differential enrichment of regulatory motifs in the composite network of protein-protein and gene regulatory interactions
por: Hegde, Shubhada R, et al.
Publicado: (2014)

Erratum to: Rhodococcus erythropolis as a host for expression, secretion and glycosylation of Mycobacterium tuberculosis proteins
por: Vallecillo, Antonio J., et al.
Publicado: (2017)

Performativity and a microbe: Exploring Mycobacterium bovis and the political ecologies of bovine tuberculosis
por: Robinson, Philip A.
Publicado: (2018)

Information quantity for secondary structure propensities of protein subsequences in the Protein Data Bank
por: Kondo, Ryohei, et al.
Publicado: (2022)

Worldwide Protein Data Bank validation information: usage and trends
por: Smart, Oliver S., et al.
Publicado: (2018)

Genome analysis identifies a spontaneous nonsense mutation in ppsD leading to attenuation of virulence in laboratory-manipulated Mycobacterium tuberculosis
por: De Majumdar, Shyamasree, et al.
Publicado: (2019)

Starch–protein interaction effects on lipid metabolism and gut microbes in host
por: Wang, Kaijun, et al.
Publicado: (2022)

Bioinformatic identification of Mycobacterium tuberculosis proteins likely to target host cell mitochondria: virulence factors?
por: Moreno-Altamirano, María Maximina Bertha, et al.
Publicado: (2012)

The PPE2 protein of Mycobacterium tuberculosis translocates to host nucleus and inhibits nitric oxide production
por: Bhat, Khalid Hussain, et al.
Publicado: (2017)

Mycobacterium tuberculosis senses host Interferon-γ via the membrane protein MmpL10
por: Ahmed, Mohamed, et al.
Publicado: (2022)

Plasma host protein signatures correlating with Mycobacterium tuberculosis activity prior to and during antituberculosis treatment
por: Ndiaye, Mame Diarra Bousso, et al.
Publicado: (2022)

Integrating genomic information with protein sequence and 3D atomic level structure at the RCSB protein data bank
por: Prlić, Andreas, et al.
Publicado: (2016)

PAR-3D: a server to predict protein active site residues
por: Goyal, Kshama, et al.
Publicado: (2007)

Protein data bank
por: Parasuraman, S.
Publicado: (2012)

The role of Mycobacterium tuberculosis acetyltransferase and protein acetylation modifications in tuberculosis
por: Huang, Yinxia, et al.
Publicado: (2023)

Whole Genome Sequencing Refines Knowledge on the Population Structure of Mycobacterium bovis from a Multi-Host Tuberculosis System
por: Reis, Ana C., et al.
Publicado: (2021)

Lectins of Mycobacterium tuberculosis – rarely studied proteins
por: Kolbe, Katharina, et al.
Publicado: (2019)

Understanding Communication Signals during Mycobacterial Latency through Predicted Genome-Wide Protein Interactions and Boolean Modeling
por: Hegde, Shubhada R., et al.
Publicado: (2012)

Local Design Principles at Hippocampal Synapses Revealed by an Energy-Information Trade-Off
por: Mahajan, Gaurang, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_s3thng8g84j6sel0e2d6pvc0ql