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Characterization of limes (Citrus aurantifolia) grown in Bhutan and Indonesia using high-throughput sequencing
Lime [Citrus aurantifolia (Cristm.) Swingle] is a Citrus species that is a popular ingredient in many cuisines. Some citrus plants are known to originate in the area ranging from northeastern India to southwestern China. In the current study, we characterized and compared limes grown in Bhutan (n =...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5381282/ https://www.ncbi.nlm.nih.gov/pubmed/24781859 http://dx.doi.org/10.1038/srep04853 |
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author | Penjor, Tshering Mimura, Takashi Matsumoto, Ryoji Yamamoto, Masashi Nagano, Yukio |
author_facet | Penjor, Tshering Mimura, Takashi Matsumoto, Ryoji Yamamoto, Masashi Nagano, Yukio |
author_sort | Penjor, Tshering |
collection | PubMed |
description | Lime [Citrus aurantifolia (Cristm.) Swingle] is a Citrus species that is a popular ingredient in many cuisines. Some citrus plants are known to originate in the area ranging from northeastern India to southwestern China. In the current study, we characterized and compared limes grown in Bhutan (n = 5 accessions) and Indonesia (n = 3 accessions). The limes were separated into two groups based on their morphology. Restriction site-associated DNA sequencing (RAD-seq) separated the eight accessions into two clusters. One cluster contained four accessions from Bhutan, whereas the other cluster contained one accession from Bhutan and the three accessions from Indonesia. This genetic classification supported the morphological classification of limes. The analysis suggests that the properties associated with asexual reproduction, and somatic homologous recombination, have contributed to the genetic diversification of limes. |
format | Online Article Text |
id | pubmed-5381282 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-53812822017-04-11 Characterization of limes (Citrus aurantifolia) grown in Bhutan and Indonesia using high-throughput sequencing Penjor, Tshering Mimura, Takashi Matsumoto, Ryoji Yamamoto, Masashi Nagano, Yukio Sci Rep Article Lime [Citrus aurantifolia (Cristm.) Swingle] is a Citrus species that is a popular ingredient in many cuisines. Some citrus plants are known to originate in the area ranging from northeastern India to southwestern China. In the current study, we characterized and compared limes grown in Bhutan (n = 5 accessions) and Indonesia (n = 3 accessions). The limes were separated into two groups based on their morphology. Restriction site-associated DNA sequencing (RAD-seq) separated the eight accessions into two clusters. One cluster contained four accessions from Bhutan, whereas the other cluster contained one accession from Bhutan and the three accessions from Indonesia. This genetic classification supported the morphological classification of limes. The analysis suggests that the properties associated with asexual reproduction, and somatic homologous recombination, have contributed to the genetic diversification of limes. Nature Publishing Group 2014-04-30 /pmc/articles/PMC5381282/ /pubmed/24781859 http://dx.doi.org/10.1038/srep04853 Text en Copyright © 2014, Macmillan Publishers Limited. All rights reserved http://creativecommons.org/licenses/by/3.0/ This work is licensed under a Creative Commons Attribution 3.0 Unported License. The images in this article are included in the article's Creative Commons license, unless indicated otherwise in the image credit; if the image is not included under the Creative Commons license, users will need to obtain permission from the license holder in order to reproduce the image. To view a copy of this license, visit http://creativecommons.org/licenses/by/3.0/ |
spellingShingle | Article Penjor, Tshering Mimura, Takashi Matsumoto, Ryoji Yamamoto, Masashi Nagano, Yukio Characterization of limes (Citrus aurantifolia) grown in Bhutan and Indonesia using high-throughput sequencing |
title | Characterization of limes (Citrus aurantifolia) grown in Bhutan and Indonesia using high-throughput sequencing |
title_full | Characterization of limes (Citrus aurantifolia) grown in Bhutan and Indonesia using high-throughput sequencing |
title_fullStr | Characterization of limes (Citrus aurantifolia) grown in Bhutan and Indonesia using high-throughput sequencing |
title_full_unstemmed | Characterization of limes (Citrus aurantifolia) grown in Bhutan and Indonesia using high-throughput sequencing |
title_short | Characterization of limes (Citrus aurantifolia) grown in Bhutan and Indonesia using high-throughput sequencing |
title_sort | characterization of limes (citrus aurantifolia) grown in bhutan and indonesia using high-throughput sequencing |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5381282/ https://www.ncbi.nlm.nih.gov/pubmed/24781859 http://dx.doi.org/10.1038/srep04853 |
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