Cargando…

Genome analysis of Hibiscus syriacus provides insights of polyploidization and indeterminate flowering in woody plants

Hibiscus syriacus (L.) (rose of Sharon) is one of the most widespread garden shrubs in the world. We report a draft of the H. syriacus genome comprised of a 1.75 Gb assembly that covers 92% of the genome with only 1.7% (33 Mb) gap sequences. Predicted gene modeling detected 87,603 genes, mostly supp...

Descripción completa

Detalles Bibliográficos
Autores principales:	Kim, Yong-Min, Kim, Seungill, Koo, Namjin, Shin, Ah-Young, Yeom, Seon-In, Seo, Eunyoung, Park, Seong-Jin, Kang, Won-Hee, Kim, Myung-Shin, Park, Jieun, Jang, Insu, Kim, Pan-Gyu, Byeon, Iksu, Kim, Min-Seo, Choi, JinHyuk, Ko, Gunhwan, Hwang, JiHye, Yang, Tae-Jin, Choi, Sang-Bong, Lee, Je Min, Lim, Ki-Byung, Lee, Jungho, Choi, Ik-Young, Park, Beom-Seok, Kwon, Suk-Yoon, Choi, Doil, Kim, Ryan W.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2017
Materias:	Full Papers
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5381346/ https://www.ncbi.nlm.nih.gov/pubmed/28011721 http://dx.doi.org/10.1093/dnares/dsw049

Ejemplares similares

Small RNA Transcriptome of Hibiscus Syriacus Provides Insights into the Potential Influence of microRNAs in Flower Development and Terpene Synthesis
por: Kim, Taewook, et al.
Publicado: (2017)

Two long read-based genome assembly and annotation of polyploidy woody plants, Hibiscus syriacus L. using PacBio and Nanopore platforms
por: Koo, Hyunjin, et al.
Publicado: (2023)

Antidepressant-Like and Neuroprotective Effects of Ethanol Extract from the Root Bark of Hibiscus syriacus L.
por: Kim, Young Hwa, et al.
Publicado: (2018)

Protocol for a randomized controlled trial evaluating the effect of Hibiscus syriacus L. flower extract on sleep quality
por: Choi, Yujin, et al.
Publicado: (2023)

Draft genome sequences of two oriental melons, Cucumis melo L. var. makuwa
por: Shin, Ah-Young, et al.
Publicado: (2019)

Anthocyanins from Hibiscus syriacus L. Inhibit Melanogenesis by Activating the ERK Signaling Pathway
por: Karunarathne, Wisurumuni Arachchilage Hasitha Maduranga, et al.
Publicado: (2019)

The complete chloroplast genome of Hibiscus syriacus using long-read sequencing: Comparative analysis to examine the evolution of the tribe Hibisceae
por: Koo, Hyunjin, et al.
Publicado: (2023)

Prometheus, an omics portal for interkingdom comparative genomic analyses
por: Ko, Gunhwan, et al.
Publicado: (2020)

Genome-wide comparative analysis in Solanaceous species reveals evolution of microRNAs targeting defense genes in Capsicum spp.
por: Seo, Eunyoung, et al.
Publicado: (2018)

Nonanoic Acid, an Antifungal Compound from Hibiscus syriacus Ggoma
por: Jang, Yun-Woo, et al.
Publicado: (2012)

Anthocyanins from Hibiscus syriacus L. Inhibit Oxidative Stress-Mediated Apoptosis by Activating the Nrf2/HO-1 Signaling Pathway
por: Molagoda, Ilandarage Menu Neelaka, et al.
Publicado: (2020)

Nutritional composition and phytochemical screening in different parts of Hibiscus syriacus L.
por: Park, Yunmi, et al.
Publicado: (2022)

Protective Effect of Anthocyanin-Enriched Polyphenols from Hibiscus syriacus L. (Malvaceae) against Ultraviolet B-Induced Damage
por: Karunarathne, Wisurumuni Arachchilage Hasitha Maduranga, et al.
Publicado: (2021)

Effects of Drip Irrigation-Fertilization on Growth, Flowering, Photosynthesis and Nutrient Absorption of Containerized Seedlings of Hibiscus syriacus L. (Haeoreum)
por: Jin, Eon-Ju, et al.
Publicado: (2023)

Genome-Wide Comparative Analyses Reveal the Dynamic Evolution of Nucleotide-Binding Leucine-Rich Repeat Gene Family among Solanaceae Plants
por: Seo, Eunyoung, et al.
Publicado: (2016)

Effect of Absolute From Hibiscus syriacus L. Flower on Wound Healing in Keratinocytes
por: Yoon, Seok Won, et al.
Publicado: (2017)

New role of LTR-retrotransposons for emergence and expansion of disease-resistance genes and high-copy gene families in plants
por: Kim, Seungill, et al.
Publicado: (2018)

Comparative analysis of de novo genomes reveals dynamic intra-species divergence of NLRs in pepper
por: Kim, Myung-Shin, et al.
Publicado: (2021)

Comparative and expression analyses of AP2/ERF genes reveal copy number expansion and potential functions of ERF genes in Solanaceae
por: Choi, Jin-Wook, et al.
Publicado: (2023)

3DIV update for 2021: a comprehensive resource of 3D genome and 3D cancer genome
por: Kim, Kyukwang, et al.
Publicado: (2020)

Near-Hexaploid and Near-Tetraploid Aneuploid Progenies Derived from Backcrossing Tetraploid Parents Hibiscus syriacus × (H. syriacus × H. paramutabilis)
por: Chen, Hsuan, et al.
Publicado: (2022)

Physiological and transcriptional mechanisms associated with cadmium stress tolerance in Hibiscus syriacus L.
por: Li, Xiang, et al.
Publicado: (2023)

Phenolic Compounds in Extracts of Hibiscus acetosella (Cranberry Hibiscus) and Their Antioxidant and Antibacterial Properties
por: Lyu, Jae Il, et al.
Publicado: (2020)

Anthocyanins from Hibiscus syriacus L. Inhibit NLRP3 Inflammasome in BV2 Microglia Cells by Alleviating NF-κB- and ER Stress-Induced Ca(2+) Accumulation and Mitochondrial ROS Production
por: Molagoda, Ilandarage Menu Neelaka, et al.
Publicado: (2021)

Global gene expression profiling for fruit organs and pathogen infections in the pepper, Capsicum annuum L.
por: Kim, Myung-Shin, et al.
Publicado: (2018)

Comprehensive analysis of Translationally Controlled Tumor Protein (TCTP) provides insights for lineage-specific evolution and functional divergence
por: Koo, Namjin, et al.
Publicado: (2020)

The triterpenoids of Hibiscus syriacus induce apoptosis and inhibit cell migration in breast cancer cells
por: Hsu, Ren-Jun, et al.
Publicado: (2015)

Hibiscus syriacus Extract from an Established Cell Culture Stimulates Skin Wound Healing
por: di Martino, O., et al.
Publicado: (2017)

Risk assessment of hepatocellular carcinoma development for indeterminate hepatic nodules in patients with chronic hepatitis B
por: Shin, Haneulsaem, et al.
Publicado: (2019)

The Hot Pepper (Capsicum annuum) MicroRNA Transcriptome Reveals Novel and Conserved Targets: A Foundation for Understanding MicroRNA Functional Roles in Hot Pepper
por: Hwang, Dong-Gyu, et al.
Publicado: (2013)

Characterization of Gene Isoforms Related to Cellulose and Lignin Biosynthesis in Kenaf (Hibiscus cannabinus L.) Mutant
por: Lyu, Jae Il, et al.
Publicado: (2020)

tgfam‐finder: a novel solution for target‐gene family annotation in plants
por: Kim, Seungill, et al.
Publicado: (2020)

SNUGB: a versatile genome browser supporting comparative and functional fungal genomics
por: Jung, Kyongyong, et al.
Publicado: (2008)

Major Quantitative Trait Loci and Putative Candidate Genes for Powdery Mildew Resistance and Fruit-Related Traits Revealed by an Intraspecific Genetic Map for Watermelon (Citrullus lanatus var. lanatus)
por: Kim, Kwang-Hwan, et al.
Publicado: (2015)

An ultra-high-density bin map facilitates high-throughput QTL mapping of horticultural traits in pepper (Capsicum annuum)
por: Han, Koeun, et al.
Publicado: (2016)

New reference genome sequences of hot pepper reveal the massive evolution of plant disease-resistance genes by retroduplication
por: Kim, Seungill, et al.
Publicado: (2017)

GEMiCCL: mining genotype and expression data of cancer cell lines with elaborate visualization
por: Jeong, Inhae, et al.
Publicado: (2018)

An integrated metabolome and transcriptome analysis of the Hibiscus syriacus L. petals reveal the molecular mechanisms of anthocyanin accumulation
por: Wang, Xiaohong, et al.
Publicado: (2022)

3DIV: A 3D-genome Interaction Viewer and database
por: Yang, Dongchan, et al.
Publicado: (2018)

The effect of remote ischemic preconditioning on serum creatinine in patients undergoing partial nephrectomy: a study protocol for a randomized controlled trial
por: Hur, Min, et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_ro88ab6r1s8liej1d1b663213g