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Period doubling induced by thermal noise amplification in genetic circuits
Rhythms of life are dictated by oscillations, which take place in a wide rage of biological scales. In bacteria, for example, oscillations have been proven to control many fundamental processes, ranging from gene expression to cell divisions. In genetic circuits, oscillations originate from elementa...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5382689/ https://www.ncbi.nlm.nih.gov/pubmed/25404210 http://dx.doi.org/10.1038/srep07088 |
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author | Ruocco, G. Fratalocchi, A. |
author_facet | Ruocco, G. Fratalocchi, A. |
author_sort | Ruocco, G. |
collection | PubMed |
description | Rhythms of life are dictated by oscillations, which take place in a wide rage of biological scales. In bacteria, for example, oscillations have been proven to control many fundamental processes, ranging from gene expression to cell divisions. In genetic circuits, oscillations originate from elemental block such as autorepressors and toggle switches, which produce robust and noise-free cycles with well defined frequency. In some circumstances, the oscillation period of biological functions may double, thus generating bistable behaviors whose ultimate origin is at the basis of intense investigations. Motivated by brain studies, we here study an “elemental” genetic circuit, where a simple nonlinear process interacts with a noisy environment. In the proposed system, nonlinearity naturally arises from the mechanism of cooperative stability, which regulates the concentration of a protein produced during a transcription process. In this elemental model, bistability results from the coherent amplification of environmental fluctuations due to a stochastic resonance of nonlinear origin. This suggests that the period doubling observed in many biological functions might result from the intrinsic interplay between nonlinearity and thermal noise. |
format | Online Article Text |
id | pubmed-5382689 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-53826892017-04-11 Period doubling induced by thermal noise amplification in genetic circuits Ruocco, G. Fratalocchi, A. Sci Rep Article Rhythms of life are dictated by oscillations, which take place in a wide rage of biological scales. In bacteria, for example, oscillations have been proven to control many fundamental processes, ranging from gene expression to cell divisions. In genetic circuits, oscillations originate from elemental block such as autorepressors and toggle switches, which produce robust and noise-free cycles with well defined frequency. In some circumstances, the oscillation period of biological functions may double, thus generating bistable behaviors whose ultimate origin is at the basis of intense investigations. Motivated by brain studies, we here study an “elemental” genetic circuit, where a simple nonlinear process interacts with a noisy environment. In the proposed system, nonlinearity naturally arises from the mechanism of cooperative stability, which regulates the concentration of a protein produced during a transcription process. In this elemental model, bistability results from the coherent amplification of environmental fluctuations due to a stochastic resonance of nonlinear origin. This suggests that the period doubling observed in many biological functions might result from the intrinsic interplay between nonlinearity and thermal noise. Nature Publishing Group 2014-11-18 /pmc/articles/PMC5382689/ /pubmed/25404210 http://dx.doi.org/10.1038/srep07088 Text en Copyright © 2014, Macmillan Publishers Limited. All rights reserved http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder in order to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Ruocco, G. Fratalocchi, A. Period doubling induced by thermal noise amplification in genetic circuits |
title | Period doubling induced by thermal noise amplification in genetic circuits |
title_full | Period doubling induced by thermal noise amplification in genetic circuits |
title_fullStr | Period doubling induced by thermal noise amplification in genetic circuits |
title_full_unstemmed | Period doubling induced by thermal noise amplification in genetic circuits |
title_short | Period doubling induced by thermal noise amplification in genetic circuits |
title_sort | period doubling induced by thermal noise amplification in genetic circuits |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5382689/ https://www.ncbi.nlm.nih.gov/pubmed/25404210 http://dx.doi.org/10.1038/srep07088 |
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