Cargando…

Links between DNA methylation and nucleosome occupancy in the human genome

BACKGROUND: DNA methylation is an epigenetic modification that is enriched in heterochromatin but depleted at active promoters and enhancers. However, the debate on whether or not DNA methylation is a reliable indicator of high nucleosome occupancy has not been settled. For example, the methylation...

Descripción completa

Detalles Bibliográficos
Autores principales:	Collings, Clayton K., Anderson, John N.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2017
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5387343/ https://www.ncbi.nlm.nih.gov/pubmed/28413449 http://dx.doi.org/10.1186/s13072-017-0125-5

Ejemplares similares

Correlations between DNA methylation levels and nucleosome enrichment in the human genome
por: Collings, Clayton K, et al.
Publicado: (2013)

Effects of DNA methylation on nucleosome stability
por: Collings, Clayton K., et al.
Publicado: (2013)

Exploring the Link between Nucleosome Occupancy and DNA Methylation
por: Lövkvist, Cecilia, et al.
Publicado: (2018)

Genome-wide nucleosome occupancy and DNA methylation profiling of four human cell lines
por: Statham, Aaron L., et al.
Publicado: (2014)

Oligonucleotide Sequence Motifs as Nucleosome Positioning Signals
por: Collings, Clayton K., et al.
Publicado: (2010)

Are nucleosome positions in vivo primarily determined by histone–DNA sequence preferences?
por: Stein, Arnold, et al.
Publicado: (2010)

NOMePlot: analysis of DNA methylation and nucleosome occupancy at the single molecule
por: Requena, Francisco, et al.
Publicado: (2019)

Modeling interactions between adjacent nucleosomes improves genome-wide predictions of nucleosome occupancy
por: Lubliner, Shai, et al.
Publicado: (2009)

An effect of DNA sequence on nucleosome occupancy and removal
por: Wang, Xin, et al.
Publicado: (2011)

Stochastic Variation in DNA Methylation Modulates Nucleosome Occupancy and Alternative Splicing in Arabidopsis thaliana
por: Jabre, Ibtissam, et al.
Publicado: (2022)

Genome wide analysis of DNA methylation and nucleosome positioning
por: Jones, Peter A
Publicado: (2013)

Characterization of Dnmt1 Binding and DNA Methylation on Nucleosomes and Nucleosomal Arrays
por: Schrader, Anna, et al.
Publicado: (2015)

Widespread plasticity in CTCF occupancy linked to DNA methylation
por: Wang, Hao, et al.
Publicado: (2012)

Predicting Human Nucleosome Occupancy from Primary Sequence
por: Gupta, Shobhit, et al.
Publicado: (2008)

DNA methylation determines nucleosome occupancy in the 5′-CpG islands of tumor suppressor genes
por: Portela, A, et al.
Publicado: (2013)

Global nucleosome occupancy in yeast
por: Bernstein, Bradley E, et al.
Publicado: (2004)

High Nucleosome Occupancy Is Encoded at Human Regulatory Sequences
por: Tillo, Desiree, et al.
Publicado: (2010)

DNA Methylation Regulated Nucleosome Dynamics
por: Jimenez-Useche, Isabel, et al.
Publicado: (2013)

Human exonization through differential nucleosome occupancy
por: Li, Yumei, et al.
Publicado: (2018)

Genome-wide mapping of nucleosome positioning and DNA methylation within individual DNA molecules
por: Kelly, Theresa K., et al.
Publicado: (2012)

Absolute nucleosome occupancy map for the Saccharomyces cerevisiae genome
por: Oberbeckmann, Elisa, et al.
Publicado: (2019)

Preferential Nucleosome Occupancy at High Values of DNA Helical Rise
por: Pedone, Francesco, et al.
Publicado: (2012)

A histone arginine methylation localizes to nucleosomes in satellite II and III DNA sequences in the human genome
por: Capurso, Daniel, et al.
Publicado: (2012)

Nucleosome deposition and DNA methylation at coding region boundaries
por: Choi, Jung Kyoon, et al.
Publicado: (2009)

DNA-encoded nucleosome occupancy is associated with transcription levels in the human malaria parasite Plasmodium falciparum
por: Bunnik, Evelien M, et al.
Publicado: (2014)

Nucleosome repositioning links DNA (de)methylation and differential CTCF binding during stem cell development
por: Teif, Vladimir B., et al.
Publicado: (2014)

Disruption of polyhomeotic polymerization decreases nucleosome occupancy and alters genome accessibility
por: Amin, Adfar, et al.
Publicado: (2023)

Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome
por: Pedersen, Jakob Skou, et al.
Publicado: (2014)

Influence of DNA methylation on positioning and DNA flexibility of nucleosomes with pericentric satellite DNA
por: Osakabe, Akihisa, et al.
Publicado: (2015)

DNA physical properties determine nucleosome occupancy from yeast to fly
por: Miele, Vincent, et al.
Publicado: (2008)

Nucleosomes protect DNA from DNA methylation in vivo and in vitro
por: Felle, Max, et al.
Publicado: (2011)

Nucleosome assembly and genome integrity: The fork is the link
por: Prado, Félix, et al.
Publicado: (2012)

Controls of Nucleosome Positioning in the Human Genome
por: Gaffney, Daniel J., et al.
Publicado: (2012)

Methylscaper: an R/Shiny app for joint visualization of DNA methylation and nucleosome occupancy in single-molecule and single-cell data
por: Knight, Parker, et al.
Publicado: (2021)

Understanding the Connection between Epigenetic DNA Methylation and Nucleosome Positioning from Computer Simulations
por: Portella, Guillem, et al.
Publicado: (2013)

Multiple Distinct Stimuli Increase Measured Nucleosome Occupancy around Human Promoters
por: Pham, Chuong D., et al.
Publicado: (2011)

Stimulation of the Drosophila immune system alters genome-wide nucleosome occupancy
por: Ren, Yingxue, et al.
Publicado: (2015)

MNase titration reveals differences between nucleosome occupancy and chromatin accessibility
por: Mieczkowski, Jakub, et al.
Publicado: (2016)

HIV chromatin is a preferred target for drugs that bind in the DNA minor groove
por: Collings, Clayton K., et al.
Publicado: (2019)

Analysis of nucleosome positioning determined by DNA helix curvature in the human genome
por: Liu, Hongde, et al.
Publicado: (2011)

Cannot write session to /tmp/vufind_sessions/sess_nlk88qfbtb07i37mip3nkkrc3u