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Correlations in the degeneracy of structurally controllable topologies for networks

Many dynamic systems display complex emergent phenomena. By directly controlling a subset of system components (nodes) via external intervention it is possible to indirectly control every other component in the system. When the system is linear or can be approximated sufficiently well by a linear mo...

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Autores principales: Campbell, Colin, Aucott, Steven, Ruths, Justin, Ruths, Derek, Shea, Katriona, Albert, Réka
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5388858/
https://www.ncbi.nlm.nih.gov/pubmed/28401952
http://dx.doi.org/10.1038/srep46251
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author Campbell, Colin
Aucott, Steven
Ruths, Justin
Ruths, Derek
Shea, Katriona
Albert, Réka
author_facet Campbell, Colin
Aucott, Steven
Ruths, Justin
Ruths, Derek
Shea, Katriona
Albert, Réka
author_sort Campbell, Colin
collection PubMed
description Many dynamic systems display complex emergent phenomena. By directly controlling a subset of system components (nodes) via external intervention it is possible to indirectly control every other component in the system. When the system is linear or can be approximated sufficiently well by a linear model, methods exist to identify the number and connectivity of a minimum set of external inputs (constituting a so-called minimal control topology, or MCT). In general, many MCTs exist for a given network; here we characterize a broad ensemble of empirical networks in terms of the fraction of nodes and edges that are always, sometimes, or never a part of an MCT. We study the relationships between the measures, and apply the methodology to the T-LGL leukemia signaling network as a case study. We show that the properties introduced in this report can be used to predict key components of biological networks, with potentially broad applications to network medicine.
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spelling pubmed-53888582017-04-14 Correlations in the degeneracy of structurally controllable topologies for networks Campbell, Colin Aucott, Steven Ruths, Justin Ruths, Derek Shea, Katriona Albert, Réka Sci Rep Article Many dynamic systems display complex emergent phenomena. By directly controlling a subset of system components (nodes) via external intervention it is possible to indirectly control every other component in the system. When the system is linear or can be approximated sufficiently well by a linear model, methods exist to identify the number and connectivity of a minimum set of external inputs (constituting a so-called minimal control topology, or MCT). In general, many MCTs exist for a given network; here we characterize a broad ensemble of empirical networks in terms of the fraction of nodes and edges that are always, sometimes, or never a part of an MCT. We study the relationships between the measures, and apply the methodology to the T-LGL leukemia signaling network as a case study. We show that the properties introduced in this report can be used to predict key components of biological networks, with potentially broad applications to network medicine. Nature Publishing Group 2017-04-12 /pmc/articles/PMC5388858/ /pubmed/28401952 http://dx.doi.org/10.1038/srep46251 Text en Copyright © 2017, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Campbell, Colin
Aucott, Steven
Ruths, Justin
Ruths, Derek
Shea, Katriona
Albert, Réka
Correlations in the degeneracy of structurally controllable topologies for networks
title Correlations in the degeneracy of structurally controllable topologies for networks
title_full Correlations in the degeneracy of structurally controllable topologies for networks
title_fullStr Correlations in the degeneracy of structurally controllable topologies for networks
title_full_unstemmed Correlations in the degeneracy of structurally controllable topologies for networks
title_short Correlations in the degeneracy of structurally controllable topologies for networks
title_sort correlations in the degeneracy of structurally controllable topologies for networks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5388858/
https://www.ncbi.nlm.nih.gov/pubmed/28401952
http://dx.doi.org/10.1038/srep46251
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