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Gait characterization in golden retriever muscular dystrophy dogs using linear discriminant analysis
BACKGROUND: Accelerometric analysis of gait abnormalities in golden retriever muscular dystrophy (GRMD) dogs is of limited sensitivity, and produces highly complex data. The use of discriminant analysis may enable simpler and more sensitive evaluation of treatment benefits in this important preclini...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5388997/ https://www.ncbi.nlm.nih.gov/pubmed/28403854 http://dx.doi.org/10.1186/s12891-017-1494-4 |
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author | Fraysse, Bodvaël Barthélémy, Inès Qannari, El Mostafa Rouger, Karl Thorin, Chantal Blot, Stéphane Le Guiner, Caroline Chérel, Yan Hogrel, Jean-Yves |
author_facet | Fraysse, Bodvaël Barthélémy, Inès Qannari, El Mostafa Rouger, Karl Thorin, Chantal Blot, Stéphane Le Guiner, Caroline Chérel, Yan Hogrel, Jean-Yves |
author_sort | Fraysse, Bodvaël |
collection | PubMed |
description | BACKGROUND: Accelerometric analysis of gait abnormalities in golden retriever muscular dystrophy (GRMD) dogs is of limited sensitivity, and produces highly complex data. The use of discriminant analysis may enable simpler and more sensitive evaluation of treatment benefits in this important preclinical model. METHODS: Accelerometry was performed twice monthly between the ages of 2 and 12 months on 8 healthy and 20 GRMD dogs. Seven accelerometric parameters were analysed using linear discriminant analysis (LDA). Manipulation of the dependent and independent variables produced three distinct models. The ability of each model to detect gait alterations and their pattern change with age was tested using a leave-one-out cross-validation approach. RESULTS: Selecting genotype (healthy or GRMD) as the dependent variable resulted in a model (Model 1) allowing a good discrimination between the gait phenotype of GRMD and healthy dogs. However, this model was not sufficiently representative of the disease progression. In Model 2, age in months was added as a supplementary dependent variable (GRMD_2 to GRMD_12 and Healthy_2 to Healthy_9.5), resulting in a high overall misclassification rate (83.2%). To improve accuracy, a third model (Model 3) was created in which age was also included as an explanatory variable. This resulted in an overall misclassification rate lower than 12%. Model 3 was evaluated using blinded data pertaining to 81 healthy and GRMD dogs. In all but one case, the model correctly matched gait phenotype to the actual genotype. Finally, we used Model 3 to reanalyse data from a previous study regarding the effects of immunosuppressive treatments on muscular dystrophy in GRMD dogs. Our model identified significant effect of immunosuppressive treatments on gait quality, corroborating the original findings, with the added advantages of direct statistical analysis with greater sensitivity and more comprehensible data representation. CONCLUSIONS: Gait analysis using LDA allows for improved analysis of accelerometry data by applying a decision-making analysis approach to the evaluation of preclinical treatment benefits in GRMD dogs. |
format | Online Article Text |
id | pubmed-5388997 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-53889972017-04-14 Gait characterization in golden retriever muscular dystrophy dogs using linear discriminant analysis Fraysse, Bodvaël Barthélémy, Inès Qannari, El Mostafa Rouger, Karl Thorin, Chantal Blot, Stéphane Le Guiner, Caroline Chérel, Yan Hogrel, Jean-Yves BMC Musculoskelet Disord Technical Advance BACKGROUND: Accelerometric analysis of gait abnormalities in golden retriever muscular dystrophy (GRMD) dogs is of limited sensitivity, and produces highly complex data. The use of discriminant analysis may enable simpler and more sensitive evaluation of treatment benefits in this important preclinical model. METHODS: Accelerometry was performed twice monthly between the ages of 2 and 12 months on 8 healthy and 20 GRMD dogs. Seven accelerometric parameters were analysed using linear discriminant analysis (LDA). Manipulation of the dependent and independent variables produced three distinct models. The ability of each model to detect gait alterations and their pattern change with age was tested using a leave-one-out cross-validation approach. RESULTS: Selecting genotype (healthy or GRMD) as the dependent variable resulted in a model (Model 1) allowing a good discrimination between the gait phenotype of GRMD and healthy dogs. However, this model was not sufficiently representative of the disease progression. In Model 2, age in months was added as a supplementary dependent variable (GRMD_2 to GRMD_12 and Healthy_2 to Healthy_9.5), resulting in a high overall misclassification rate (83.2%). To improve accuracy, a third model (Model 3) was created in which age was also included as an explanatory variable. This resulted in an overall misclassification rate lower than 12%. Model 3 was evaluated using blinded data pertaining to 81 healthy and GRMD dogs. In all but one case, the model correctly matched gait phenotype to the actual genotype. Finally, we used Model 3 to reanalyse data from a previous study regarding the effects of immunosuppressive treatments on muscular dystrophy in GRMD dogs. Our model identified significant effect of immunosuppressive treatments on gait quality, corroborating the original findings, with the added advantages of direct statistical analysis with greater sensitivity and more comprehensible data representation. CONCLUSIONS: Gait analysis using LDA allows for improved analysis of accelerometry data by applying a decision-making analysis approach to the evaluation of preclinical treatment benefits in GRMD dogs. BioMed Central 2017-04-12 /pmc/articles/PMC5388997/ /pubmed/28403854 http://dx.doi.org/10.1186/s12891-017-1494-4 Text en © The Author(s). 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Technical Advance Fraysse, Bodvaël Barthélémy, Inès Qannari, El Mostafa Rouger, Karl Thorin, Chantal Blot, Stéphane Le Guiner, Caroline Chérel, Yan Hogrel, Jean-Yves Gait characterization in golden retriever muscular dystrophy dogs using linear discriminant analysis |
title | Gait characterization in golden retriever muscular dystrophy dogs using linear discriminant analysis |
title_full | Gait characterization in golden retriever muscular dystrophy dogs using linear discriminant analysis |
title_fullStr | Gait characterization in golden retriever muscular dystrophy dogs using linear discriminant analysis |
title_full_unstemmed | Gait characterization in golden retriever muscular dystrophy dogs using linear discriminant analysis |
title_short | Gait characterization in golden retriever muscular dystrophy dogs using linear discriminant analysis |
title_sort | gait characterization in golden retriever muscular dystrophy dogs using linear discriminant analysis |
topic | Technical Advance |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5388997/ https://www.ncbi.nlm.nih.gov/pubmed/28403854 http://dx.doi.org/10.1186/s12891-017-1494-4 |
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