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Animating and exploring phylogenies with fibre plots

Despite the progress that has been made in many other aspects of data visualisation, phylogenies are still represented in much the same way as they first were by Darwin. In this brief essay, I give a short review of what I consider to be some recent major advances, and outline a new kind of phylogen...

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Detalles Bibliográficos
Autor principal: Pearse, William D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000Research 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5389409/
https://www.ncbi.nlm.nih.gov/pubmed/28413610
http://dx.doi.org/10.12688/f1000research.10274.3
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author Pearse, William D.
author_facet Pearse, William D.
author_sort Pearse, William D.
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description Despite the progress that has been made in many other aspects of data visualisation, phylogenies are still represented in much the same way as they first were by Darwin. In this brief essay, I give a short review of what I consider to be some recent major advances, and outline a new kind of phylogenetic visualisation. This new graphic, the fibre plot, uses the metaphor of sections through a tree to describe change in a phylogeny. I suggest it is a useful tool in gaining an rapid overview of the timing and scale of diversification in large phylogenies.
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spelling pubmed-53894092017-04-14 Animating and exploring phylogenies with fibre plots Pearse, William D. F1000Res Opinion Article Despite the progress that has been made in many other aspects of data visualisation, phylogenies are still represented in much the same way as they first were by Darwin. In this brief essay, I give a short review of what I consider to be some recent major advances, and outline a new kind of phylogenetic visualisation. This new graphic, the fibre plot, uses the metaphor of sections through a tree to describe change in a phylogeny. I suggest it is a useful tool in gaining an rapid overview of the timing and scale of diversification in large phylogenies. F1000Research 2017-04-05 /pmc/articles/PMC5389409/ /pubmed/28413610 http://dx.doi.org/10.12688/f1000research.10274.3 Text en Copyright: © 2017 Pearse WD http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Opinion Article
Pearse, William D.
Animating and exploring phylogenies with fibre plots
title Animating and exploring phylogenies with fibre plots
title_full Animating and exploring phylogenies with fibre plots
title_fullStr Animating and exploring phylogenies with fibre plots
title_full_unstemmed Animating and exploring phylogenies with fibre plots
title_short Animating and exploring phylogenies with fibre plots
title_sort animating and exploring phylogenies with fibre plots
topic Opinion Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5389409/
https://www.ncbi.nlm.nih.gov/pubmed/28413610
http://dx.doi.org/10.12688/f1000research.10274.3
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