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A constituent-based preprocessing approach for characterising cartilage using NIR absorbance measurements

Near-infrared spectroscopy is a widely adopted technique for characterising biological tissues. The high dimensionality of spectral data, however, presents a major challenge for analysis. Here, we present a second-derivative Beer’s law-based technique aimed at projecting spectral data onto a lower d...

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Detalles Bibliográficos
Autores principales: Brown, Cameron P, Chen, Minsi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: IOP Publishing 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5390781/
https://www.ncbi.nlm.nih.gov/pubmed/28458920
http://dx.doi.org/10.1088/2057-1976/2/1/017002
Descripción
Sumario:Near-infrared spectroscopy is a widely adopted technique for characterising biological tissues. The high dimensionality of spectral data, however, presents a major challenge for analysis. Here, we present a second-derivative Beer’s law-based technique aimed at projecting spectral data onto a lower dimension feature space characterised by the constituents of the target tissue type. This is intended as a preprocessing step to provide a physically-based, low dimensionality input to predictive models. Testing the proposed technique on an experimental set of 145 bovine cartilage samples before and after enzymatic degradation, produced a clear visual separation between the normal and degraded groups. Reduced proteoglycan and collagen concentrations, and increased water concentrations were predicted by simple linear fitting following degradation (all [Formula: see text] ). Classification accuracy using the Mahalanobis distance was [Formula: see text] between these groups.