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A constituent-based preprocessing approach for characterising cartilage using NIR absorbance measurements
Near-infrared spectroscopy is a widely adopted technique for characterising biological tissues. The high dimensionality of spectral data, however, presents a major challenge for analysis. Here, we present a second-derivative Beer’s law-based technique aimed at projecting spectral data onto a lower d...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
IOP Publishing
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5390781/ https://www.ncbi.nlm.nih.gov/pubmed/28458920 http://dx.doi.org/10.1088/2057-1976/2/1/017002 |
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author | Brown, Cameron P Chen, Minsi |
author_facet | Brown, Cameron P Chen, Minsi |
author_sort | Brown, Cameron P |
collection | PubMed |
description | Near-infrared spectroscopy is a widely adopted technique for characterising biological tissues. The high dimensionality of spectral data, however, presents a major challenge for analysis. Here, we present a second-derivative Beer’s law-based technique aimed at projecting spectral data onto a lower dimension feature space characterised by the constituents of the target tissue type. This is intended as a preprocessing step to provide a physically-based, low dimensionality input to predictive models. Testing the proposed technique on an experimental set of 145 bovine cartilage samples before and after enzymatic degradation, produced a clear visual separation between the normal and degraded groups. Reduced proteoglycan and collagen concentrations, and increased water concentrations were predicted by simple linear fitting following degradation (all [Formula: see text] ). Classification accuracy using the Mahalanobis distance was [Formula: see text] between these groups. |
format | Online Article Text |
id | pubmed-5390781 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | IOP Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-53907812017-04-27 A constituent-based preprocessing approach for characterising cartilage using NIR absorbance measurements Brown, Cameron P Chen, Minsi Biomed Phys Eng Express Note Near-infrared spectroscopy is a widely adopted technique for characterising biological tissues. The high dimensionality of spectral data, however, presents a major challenge for analysis. Here, we present a second-derivative Beer’s law-based technique aimed at projecting spectral data onto a lower dimension feature space characterised by the constituents of the target tissue type. This is intended as a preprocessing step to provide a physically-based, low dimensionality input to predictive models. Testing the proposed technique on an experimental set of 145 bovine cartilage samples before and after enzymatic degradation, produced a clear visual separation between the normal and degraded groups. Reduced proteoglycan and collagen concentrations, and increased water concentrations were predicted by simple linear fitting following degradation (all [Formula: see text] ). Classification accuracy using the Mahalanobis distance was [Formula: see text] between these groups. IOP Publishing 2016-02 2016-01-18 /pmc/articles/PMC5390781/ /pubmed/28458920 http://dx.doi.org/10.1088/2057-1976/2/1/017002 Text en © 2016 IOP Publishing Ltd http://creativecommons.org/licenses/by/3.0/ Content from this work may be used under the terms of the Creative Commons Attribution 3.0 licence (http://creativecommons.org/licenses/by/3.0/) . Any further distribution of this work must maintain attribution to the author(s) and the title of the work, journal citation and DOI. |
spellingShingle | Note Brown, Cameron P Chen, Minsi A constituent-based preprocessing approach for characterising cartilage using NIR absorbance measurements |
title | A constituent-based preprocessing approach for characterising cartilage using NIR absorbance measurements |
title_full | A constituent-based preprocessing approach for characterising cartilage using NIR absorbance measurements |
title_fullStr | A constituent-based preprocessing approach for characterising cartilage using NIR absorbance measurements |
title_full_unstemmed | A constituent-based preprocessing approach for characterising cartilage using NIR absorbance measurements |
title_short | A constituent-based preprocessing approach for characterising cartilage using NIR absorbance measurements |
title_sort | constituent-based preprocessing approach for characterising cartilage using nir absorbance measurements |
topic | Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5390781/ https://www.ncbi.nlm.nih.gov/pubmed/28458920 http://dx.doi.org/10.1088/2057-1976/2/1/017002 |
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