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A constituent-based preprocessing approach for characterising cartilage using NIR absorbance measurements

Near-infrared spectroscopy is a widely adopted technique for characterising biological tissues. The high dimensionality of spectral data, however, presents a major challenge for analysis. Here, we present a second-derivative Beer’s law-based technique aimed at projecting spectral data onto a lower d...

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Detalles Bibliográficos
Autores principales: Brown, Cameron P, Chen, Minsi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: IOP Publishing 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5390781/
https://www.ncbi.nlm.nih.gov/pubmed/28458920
http://dx.doi.org/10.1088/2057-1976/2/1/017002
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author Brown, Cameron P
Chen, Minsi
author_facet Brown, Cameron P
Chen, Minsi
author_sort Brown, Cameron P
collection PubMed
description Near-infrared spectroscopy is a widely adopted technique for characterising biological tissues. The high dimensionality of spectral data, however, presents a major challenge for analysis. Here, we present a second-derivative Beer’s law-based technique aimed at projecting spectral data onto a lower dimension feature space characterised by the constituents of the target tissue type. This is intended as a preprocessing step to provide a physically-based, low dimensionality input to predictive models. Testing the proposed technique on an experimental set of 145 bovine cartilage samples before and after enzymatic degradation, produced a clear visual separation between the normal and degraded groups. Reduced proteoglycan and collagen concentrations, and increased water concentrations were predicted by simple linear fitting following degradation (all [Formula: see text] ). Classification accuracy using the Mahalanobis distance was [Formula: see text] between these groups.
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spelling pubmed-53907812017-04-27 A constituent-based preprocessing approach for characterising cartilage using NIR absorbance measurements Brown, Cameron P Chen, Minsi Biomed Phys Eng Express Note Near-infrared spectroscopy is a widely adopted technique for characterising biological tissues. The high dimensionality of spectral data, however, presents a major challenge for analysis. Here, we present a second-derivative Beer’s law-based technique aimed at projecting spectral data onto a lower dimension feature space characterised by the constituents of the target tissue type. This is intended as a preprocessing step to provide a physically-based, low dimensionality input to predictive models. Testing the proposed technique on an experimental set of 145 bovine cartilage samples before and after enzymatic degradation, produced a clear visual separation between the normal and degraded groups. Reduced proteoglycan and collagen concentrations, and increased water concentrations were predicted by simple linear fitting following degradation (all [Formula: see text] ). Classification accuracy using the Mahalanobis distance was [Formula: see text] between these groups. IOP Publishing 2016-02 2016-01-18 /pmc/articles/PMC5390781/ /pubmed/28458920 http://dx.doi.org/10.1088/2057-1976/2/1/017002 Text en © 2016 IOP Publishing Ltd http://creativecommons.org/licenses/by/3.0/ Content from this work may be used under the terms of the Creative Commons Attribution 3.0 licence (http://creativecommons.org/licenses/by/3.0/) . Any further distribution of this work must maintain attribution to the author(s) and the title of the work, journal citation and DOI.
spellingShingle Note
Brown, Cameron P
Chen, Minsi
A constituent-based preprocessing approach for characterising cartilage using NIR absorbance measurements
title A constituent-based preprocessing approach for characterising cartilage using NIR absorbance measurements
title_full A constituent-based preprocessing approach for characterising cartilage using NIR absorbance measurements
title_fullStr A constituent-based preprocessing approach for characterising cartilage using NIR absorbance measurements
title_full_unstemmed A constituent-based preprocessing approach for characterising cartilage using NIR absorbance measurements
title_short A constituent-based preprocessing approach for characterising cartilage using NIR absorbance measurements
title_sort constituent-based preprocessing approach for characterising cartilage using nir absorbance measurements
topic Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5390781/
https://www.ncbi.nlm.nih.gov/pubmed/28458920
http://dx.doi.org/10.1088/2057-1976/2/1/017002
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