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What are the assets and weaknesses of HFO detectors? A benchmark framework based on realistic simulations

High-frequency oscillations (HFO) have been suggested as biomarkers of epileptic tissues. While visual marking of these short and small oscillations is tedious and time-consuming, automatic HFO detectors have not yet met a large consensus. Even though detectors have been shown to perform well when v...

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Autores principales: Roehri, Nicolas, Pizzo, Francesca, Bartolomei, Fabrice, Wendling, Fabrice, Bénar, Christian-George
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5390983/
https://www.ncbi.nlm.nih.gov/pubmed/28406919
http://dx.doi.org/10.1371/journal.pone.0174702
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author Roehri, Nicolas
Pizzo, Francesca
Bartolomei, Fabrice
Wendling, Fabrice
Bénar, Christian-George
author_facet Roehri, Nicolas
Pizzo, Francesca
Bartolomei, Fabrice
Wendling, Fabrice
Bénar, Christian-George
author_sort Roehri, Nicolas
collection PubMed
description High-frequency oscillations (HFO) have been suggested as biomarkers of epileptic tissues. While visual marking of these short and small oscillations is tedious and time-consuming, automatic HFO detectors have not yet met a large consensus. Even though detectors have been shown to perform well when validated against visual marking, the large number of false detections due to their lack of robustness hinder their clinical application. In this study, we developed a validation framework based on realistic and controlled simulations to quantify precisely the assets and weaknesses of current detectors. We constructed a dictionary of synthesized elements—HFOs and epileptic spikes—from different patients and brain areas by extracting these elements from the original data using discrete wavelet transform coefficients. These elements were then added to their corresponding simulated background activity (preserving patient- and region- specific spectra). We tested five existing detectors against this benchmark. Compared to other studies confronting detectors, we did not only ranked them according their performance but we investigated the reasons leading to these results. Our simulations, thanks to their realism and their variability, enabled us to highlight unreported issues of current detectors: (1) the lack of robust estimation of the background activity, (2) the underestimated impact of the 1/f spectrum, and (3) the inadequate criteria defining an HFO. We believe that our benchmark framework could be a valuable tool to translate HFOs into a clinical environment.
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spelling pubmed-53909832017-05-03 What are the assets and weaknesses of HFO detectors? A benchmark framework based on realistic simulations Roehri, Nicolas Pizzo, Francesca Bartolomei, Fabrice Wendling, Fabrice Bénar, Christian-George PLoS One Research Article High-frequency oscillations (HFO) have been suggested as biomarkers of epileptic tissues. While visual marking of these short and small oscillations is tedious and time-consuming, automatic HFO detectors have not yet met a large consensus. Even though detectors have been shown to perform well when validated against visual marking, the large number of false detections due to their lack of robustness hinder their clinical application. In this study, we developed a validation framework based on realistic and controlled simulations to quantify precisely the assets and weaknesses of current detectors. We constructed a dictionary of synthesized elements—HFOs and epileptic spikes—from different patients and brain areas by extracting these elements from the original data using discrete wavelet transform coefficients. These elements were then added to their corresponding simulated background activity (preserving patient- and region- specific spectra). We tested five existing detectors against this benchmark. Compared to other studies confronting detectors, we did not only ranked them according their performance but we investigated the reasons leading to these results. Our simulations, thanks to their realism and their variability, enabled us to highlight unreported issues of current detectors: (1) the lack of robust estimation of the background activity, (2) the underestimated impact of the 1/f spectrum, and (3) the inadequate criteria defining an HFO. We believe that our benchmark framework could be a valuable tool to translate HFOs into a clinical environment. Public Library of Science 2017-04-13 /pmc/articles/PMC5390983/ /pubmed/28406919 http://dx.doi.org/10.1371/journal.pone.0174702 Text en © 2017 Roehri et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Roehri, Nicolas
Pizzo, Francesca
Bartolomei, Fabrice
Wendling, Fabrice
Bénar, Christian-George
What are the assets and weaknesses of HFO detectors? A benchmark framework based on realistic simulations
title What are the assets and weaknesses of HFO detectors? A benchmark framework based on realistic simulations
title_full What are the assets and weaknesses of HFO detectors? A benchmark framework based on realistic simulations
title_fullStr What are the assets and weaknesses of HFO detectors? A benchmark framework based on realistic simulations
title_full_unstemmed What are the assets and weaknesses of HFO detectors? A benchmark framework based on realistic simulations
title_short What are the assets and weaknesses of HFO detectors? A benchmark framework based on realistic simulations
title_sort what are the assets and weaknesses of hfo detectors? a benchmark framework based on realistic simulations
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5390983/
https://www.ncbi.nlm.nih.gov/pubmed/28406919
http://dx.doi.org/10.1371/journal.pone.0174702
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