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An algorithm for constructing the skeleton graph of degenerate systems of linear inequalities
Derive the quantitative predictions of constraint-based models require of conversion algorithms to enumerate and construct the skeleton graph conformed by the extreme points of the feasible region, where all constraints in the model are fulfilled. The conversion is problematic when the system of lin...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5391119/ https://www.ncbi.nlm.nih.gov/pubmed/28406983 http://dx.doi.org/10.1371/journal.pone.0175819 |
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author | Méndez Martínez, José Manuel Urías, Jesús |
author_facet | Méndez Martínez, José Manuel Urías, Jesús |
author_sort | Méndez Martínez, José Manuel |
collection | PubMed |
description | Derive the quantitative predictions of constraint-based models require of conversion algorithms to enumerate and construct the skeleton graph conformed by the extreme points of the feasible region, where all constraints in the model are fulfilled. The conversion is problematic when the system of linear constraints is degenerate. This paper describes a conversion algorithm that combines the best of two methods: the incremental slicing of cones that defeats degeneracy and pivoting for a swift traversal of the set of extreme points. An extensive computational practice uncovers two complementary classes of conversion problems. The two classes are distinguished by a practical measure of complexity that involves the input and output sizes. Detailed characterizations of the complexity classes and the corresponding performances of the algorithm are presented. For the benefit of implementors, a simple example illustrates the stages of the exposition. |
format | Online Article Text |
id | pubmed-5391119 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-53911192017-05-03 An algorithm for constructing the skeleton graph of degenerate systems of linear inequalities Méndez Martínez, José Manuel Urías, Jesús PLoS One Research Article Derive the quantitative predictions of constraint-based models require of conversion algorithms to enumerate and construct the skeleton graph conformed by the extreme points of the feasible region, where all constraints in the model are fulfilled. The conversion is problematic when the system of linear constraints is degenerate. This paper describes a conversion algorithm that combines the best of two methods: the incremental slicing of cones that defeats degeneracy and pivoting for a swift traversal of the set of extreme points. An extensive computational practice uncovers two complementary classes of conversion problems. The two classes are distinguished by a practical measure of complexity that involves the input and output sizes. Detailed characterizations of the complexity classes and the corresponding performances of the algorithm are presented. For the benefit of implementors, a simple example illustrates the stages of the exposition. Public Library of Science 2017-04-13 /pmc/articles/PMC5391119/ /pubmed/28406983 http://dx.doi.org/10.1371/journal.pone.0175819 Text en © 2017 Méndez Martínez, Urías http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Méndez Martínez, José Manuel Urías, Jesús An algorithm for constructing the skeleton graph of degenerate systems of linear inequalities |
title | An algorithm for constructing the skeleton graph of degenerate systems of linear inequalities |
title_full | An algorithm for constructing the skeleton graph of degenerate systems of linear inequalities |
title_fullStr | An algorithm for constructing the skeleton graph of degenerate systems of linear inequalities |
title_full_unstemmed | An algorithm for constructing the skeleton graph of degenerate systems of linear inequalities |
title_short | An algorithm for constructing the skeleton graph of degenerate systems of linear inequalities |
title_sort | algorithm for constructing the skeleton graph of degenerate systems of linear inequalities |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5391119/ https://www.ncbi.nlm.nih.gov/pubmed/28406983 http://dx.doi.org/10.1371/journal.pone.0175819 |
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