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SMART-on-FHIR implemented over i2b2
We have developed an interface to serve patient data from Informatics for Integrating Biology and the Bedside (i2b2) repositories in the Fast Healthcare Interoperability Resources (FHIR) format, referred to as a SMART-on-FHIR cell. The cell serves FHIR resources on a per-patient basis, and supports...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5391721/ https://www.ncbi.nlm.nih.gov/pubmed/27274012 http://dx.doi.org/10.1093/jamia/ocw079 |
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author | Wagholikar, Kavishwar B Mandel, Joshua C Klann, Jeffery G Wattanasin, Nich Mendis, Michael Chute, Christopher G Mandl, Kenneth D Murphy, Shawn N |
author_facet | Wagholikar, Kavishwar B Mandel, Joshua C Klann, Jeffery G Wattanasin, Nich Mendis, Michael Chute, Christopher G Mandl, Kenneth D Murphy, Shawn N |
author_sort | Wagholikar, Kavishwar B |
collection | PubMed |
description | We have developed an interface to serve patient data from Informatics for Integrating Biology and the Bedside (i2b2) repositories in the Fast Healthcare Interoperability Resources (FHIR) format, referred to as a SMART-on-FHIR cell. The cell serves FHIR resources on a per-patient basis, and supports the “substitutable” modular third-party applications (SMART) OAuth2 specification for authorization of client applications. It is implemented as an i2b2 server plug-in, consisting of 6 modules: authentication, REST, i2b2-to-FHIR converter, resource enrichment, query engine, and cache. The source code is freely available as open source. We tested the cell by accessing resources from a test i2b2 installation, demonstrating that a SMART app can be launched from the cell that accesses patient data stored in i2b2. We successfully retrieved demographics, medications, labs, and diagnoses for test patients. The SMART-on-FHIR cell will enable i2b2 sites to provide simplified but secure data access in FHIR format, and will spur innovation and interoperability. Further, it transforms i2b2 into an apps platform. |
format | Online Article Text |
id | pubmed-5391721 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-53917212017-04-21 SMART-on-FHIR implemented over i2b2 Wagholikar, Kavishwar B Mandel, Joshua C Klann, Jeffery G Wattanasin, Nich Mendis, Michael Chute, Christopher G Mandl, Kenneth D Murphy, Shawn N J Am Med Inform Assoc Brief Communication We have developed an interface to serve patient data from Informatics for Integrating Biology and the Bedside (i2b2) repositories in the Fast Healthcare Interoperability Resources (FHIR) format, referred to as a SMART-on-FHIR cell. The cell serves FHIR resources on a per-patient basis, and supports the “substitutable” modular third-party applications (SMART) OAuth2 specification for authorization of client applications. It is implemented as an i2b2 server plug-in, consisting of 6 modules: authentication, REST, i2b2-to-FHIR converter, resource enrichment, query engine, and cache. The source code is freely available as open source. We tested the cell by accessing resources from a test i2b2 installation, demonstrating that a SMART app can be launched from the cell that accesses patient data stored in i2b2. We successfully retrieved demographics, medications, labs, and diagnoses for test patients. The SMART-on-FHIR cell will enable i2b2 sites to provide simplified but secure data access in FHIR format, and will spur innovation and interoperability. Further, it transforms i2b2 into an apps platform. Oxford University Press 2017-03 2016-06-06 /pmc/articles/PMC5391721/ /pubmed/27274012 http://dx.doi.org/10.1093/jamia/ocw079 Text en © The Author 2016. Published by Oxford University Press on behalf of the American Medical Informatics Association. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Brief Communication Wagholikar, Kavishwar B Mandel, Joshua C Klann, Jeffery G Wattanasin, Nich Mendis, Michael Chute, Christopher G Mandl, Kenneth D Murphy, Shawn N SMART-on-FHIR implemented over i2b2 |
title | SMART-on-FHIR implemented over i2b2 |
title_full | SMART-on-FHIR implemented over i2b2 |
title_fullStr | SMART-on-FHIR implemented over i2b2 |
title_full_unstemmed | SMART-on-FHIR implemented over i2b2 |
title_short | SMART-on-FHIR implemented over i2b2 |
title_sort | smart-on-fhir implemented over i2b2 |
topic | Brief Communication |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5391721/ https://www.ncbi.nlm.nih.gov/pubmed/27274012 http://dx.doi.org/10.1093/jamia/ocw079 |
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