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Predicting inpatient clinical order patterns with probabilistic topic models vs conventional order sets
Objective: Build probabilistic topic model representations of hospital admissions processes and compare the ability of such models to predict clinical order patterns as compared to preconstructed order sets. Materials and Methods: The authors evaluated the first 24 hours of structured electronic hea...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5391730/ https://www.ncbi.nlm.nih.gov/pubmed/27655861 http://dx.doi.org/10.1093/jamia/ocw136 |
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author | Chen, Jonathan H Goldstein, Mary K Asch, Steven M Mackey, Lester Altman, Russ B |
author_facet | Chen, Jonathan H Goldstein, Mary K Asch, Steven M Mackey, Lester Altman, Russ B |
author_sort | Chen, Jonathan H |
collection | PubMed |
description | Objective: Build probabilistic topic model representations of hospital admissions processes and compare the ability of such models to predict clinical order patterns as compared to preconstructed order sets. Materials and Methods: The authors evaluated the first 24 hours of structured electronic health record data for > 10 K inpatients. Drawing an analogy between structured items (e.g., clinical orders) to words in a text document, the authors performed latent Dirichlet allocation probabilistic topic modeling. These topic models use initial clinical information to predict clinical orders for a separate validation set of > 4 K patients. The authors evaluated these topic model-based predictions vs existing human-authored order sets by area under the receiver operating characteristic curve, precision, and recall for subsequent clinical orders. Results: Existing order sets predict clinical orders used within 24 hours with area under the receiver operating characteristic curve 0.81, precision 16%, and recall 35%. This can be improved to 0.90, 24%, and 47% (P < 10(−20)) by using probabilistic topic models to summarize clinical data into up to 32 topics. Many of these latent topics yield natural clinical interpretations (e.g., “critical care,” “pneumonia,” “neurologic evaluation”). Discussion: Existing order sets tend to provide nonspecific, process-oriented aid, with usability limitations impairing more precise, patient-focused support. Algorithmic summarization has the potential to breach this usability barrier by automatically inferring patient context, but with potential tradeoffs in interpretability. Conclusion: Probabilistic topic modeling provides an automated approach to detect thematic trends in patient care and generate decision support content. A potential use case finds related clinical orders for decision support. |
format | Online Article Text |
id | pubmed-5391730 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-53917302017-04-21 Predicting inpatient clinical order patterns with probabilistic topic models vs conventional order sets Chen, Jonathan H Goldstein, Mary K Asch, Steven M Mackey, Lester Altman, Russ B J Am Med Inform Assoc Research and Applications Objective: Build probabilistic topic model representations of hospital admissions processes and compare the ability of such models to predict clinical order patterns as compared to preconstructed order sets. Materials and Methods: The authors evaluated the first 24 hours of structured electronic health record data for > 10 K inpatients. Drawing an analogy between structured items (e.g., clinical orders) to words in a text document, the authors performed latent Dirichlet allocation probabilistic topic modeling. These topic models use initial clinical information to predict clinical orders for a separate validation set of > 4 K patients. The authors evaluated these topic model-based predictions vs existing human-authored order sets by area under the receiver operating characteristic curve, precision, and recall for subsequent clinical orders. Results: Existing order sets predict clinical orders used within 24 hours with area under the receiver operating characteristic curve 0.81, precision 16%, and recall 35%. This can be improved to 0.90, 24%, and 47% (P < 10(−20)) by using probabilistic topic models to summarize clinical data into up to 32 topics. Many of these latent topics yield natural clinical interpretations (e.g., “critical care,” “pneumonia,” “neurologic evaluation”). Discussion: Existing order sets tend to provide nonspecific, process-oriented aid, with usability limitations impairing more precise, patient-focused support. Algorithmic summarization has the potential to breach this usability barrier by automatically inferring patient context, but with potential tradeoffs in interpretability. Conclusion: Probabilistic topic modeling provides an automated approach to detect thematic trends in patient care and generate decision support content. A potential use case finds related clinical orders for decision support. Oxford University Press 2017-05 2016-09-20 /pmc/articles/PMC5391730/ /pubmed/27655861 http://dx.doi.org/10.1093/jamia/ocw136 Text en © The Author 2016. Published by Oxford University Press on behalf of the American Medical Informatics Association. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Research and Applications Chen, Jonathan H Goldstein, Mary K Asch, Steven M Mackey, Lester Altman, Russ B Predicting inpatient clinical order patterns with probabilistic topic models vs conventional order sets |
title | Predicting inpatient clinical order patterns with probabilistic topic models vs conventional order sets |
title_full | Predicting inpatient clinical order patterns with probabilistic topic models vs conventional order sets |
title_fullStr | Predicting inpatient clinical order patterns with probabilistic topic models vs conventional order sets |
title_full_unstemmed | Predicting inpatient clinical order patterns with probabilistic topic models vs conventional order sets |
title_short | Predicting inpatient clinical order patterns with probabilistic topic models vs conventional order sets |
title_sort | predicting inpatient clinical order patterns with probabilistic topic models vs conventional order sets |
topic | Research and Applications |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5391730/ https://www.ncbi.nlm.nih.gov/pubmed/27655861 http://dx.doi.org/10.1093/jamia/ocw136 |
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