Cargando…

Single-crystal X-ray diffraction and NMR crystallography of a 1:1 cocrystal of di­thia­non and pyrimethanil

A single-crystal X-ray diffraction structure of a 1:1 cocrystal of two fungicides, namely di­thia­non (DI) and pyrimethanil (PM), is reported [systematic name: 5,10-dioxo-5H,10H-naphtho­[2,3-b][1,4]dithiine-2,3-dicarbo­nitrile–4,6-dimethyl-N-phenyl­pyrimidin-2-amine (1/1), C(14)H(4)N(2)O(2)S(2)·C(12...

Descripción completa

Detalles Bibliográficos
Autores principales: Pöppler, Ann-Christin, Corlett, Emily K., Pearce, Harriet, Seymour, Mark P., Reid, Matthew, Montgomery, Mark G., Brown, Steven P.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5391860/
https://www.ncbi.nlm.nih.gov/pubmed/28257008
http://dx.doi.org/10.1107/S2053229617000870
_version_ 1783229348342398976
author Pöppler, Ann-Christin
Corlett, Emily K.
Pearce, Harriet
Seymour, Mark P.
Reid, Matthew
Montgomery, Mark G.
Brown, Steven P.
author_facet Pöppler, Ann-Christin
Corlett, Emily K.
Pearce, Harriet
Seymour, Mark P.
Reid, Matthew
Montgomery, Mark G.
Brown, Steven P.
author_sort Pöppler, Ann-Christin
collection PubMed
description A single-crystal X-ray diffraction structure of a 1:1 cocrystal of two fungicides, namely di­thia­non (DI) and pyrimethanil (PM), is reported [systematic name: 5,10-dioxo-5H,10H-naphtho­[2,3-b][1,4]dithiine-2,3-dicarbo­nitrile–4,6-dimethyl-N-phenyl­pyrimidin-2-amine (1/1), C(14)H(4)N(2)O(2)S(2)·C(12)H(13)N(2)]. Following an NMR crystallography approach, experimental solid-state magic angle spinning (MAS) NMR spectra are presented together with GIPAW (gauge-including projector augmented wave) calculations of NMR chemical shieldings. Specifically, experimental (1)H and (13)C chemical shifts are determined from two-dimensional (1)H–(13)C MAS NMR correlation spectra recorded with short and longer contact times so as to probe one-bond C—H connectivities and longer-range C⋯H proximities, whereas H⋯H proximities are identified in a (1)H double-quantum (DQ) MAS NMR spectrum. The performing of separate GIPAW calculations for the full periodic crystal structure and for isolated mol­ecules allows the determination of the change in chemical shift upon going from an isolated mol­ecule to the full crystal structure. For the (1)H NMR chemical shifts, changes of 3.6 and 2.0 ppm correspond to inter­molecular N—H⋯O and C—H⋯O hydrogen bonding, while changes of −2.7 and −1.5 ppm are due to ring current effects associated with C—H⋯π inter­actions. Even though there is a close inter­molecular S⋯O distance of 3.10 Å, it is of note that the mol­ecule-to-crystal chemical shifts for the involved sulfur or oxygen nuclei are small.
format Online
Article
Text
id pubmed-5391860
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher International Union of Crystallography
record_format MEDLINE/PubMed
spelling pubmed-53918602017-05-01 Single-crystal X-ray diffraction and NMR crystallography of a 1:1 cocrystal of di­thia­non and pyrimethanil Pöppler, Ann-Christin Corlett, Emily K. Pearce, Harriet Seymour, Mark P. Reid, Matthew Montgomery, Mark G. Brown, Steven P. Acta Crystallogr C Struct Chem Nmr Crystallography A single-crystal X-ray diffraction structure of a 1:1 cocrystal of two fungicides, namely di­thia­non (DI) and pyrimethanil (PM), is reported [systematic name: 5,10-dioxo-5H,10H-naphtho­[2,3-b][1,4]dithiine-2,3-dicarbo­nitrile–4,6-dimethyl-N-phenyl­pyrimidin-2-amine (1/1), C(14)H(4)N(2)O(2)S(2)·C(12)H(13)N(2)]. Following an NMR crystallography approach, experimental solid-state magic angle spinning (MAS) NMR spectra are presented together with GIPAW (gauge-including projector augmented wave) calculations of NMR chemical shieldings. Specifically, experimental (1)H and (13)C chemical shifts are determined from two-dimensional (1)H–(13)C MAS NMR correlation spectra recorded with short and longer contact times so as to probe one-bond C—H connectivities and longer-range C⋯H proximities, whereas H⋯H proximities are identified in a (1)H double-quantum (DQ) MAS NMR spectrum. The performing of separate GIPAW calculations for the full periodic crystal structure and for isolated mol­ecules allows the determination of the change in chemical shift upon going from an isolated mol­ecule to the full crystal structure. For the (1)H NMR chemical shifts, changes of 3.6 and 2.0 ppm correspond to inter­molecular N—H⋯O and C—H⋯O hydrogen bonding, while changes of −2.7 and −1.5 ppm are due to ring current effects associated with C—H⋯π inter­actions. Even though there is a close inter­molecular S⋯O distance of 3.10 Å, it is of note that the mol­ecule-to-crystal chemical shifts for the involved sulfur or oxygen nuclei are small. International Union of Crystallography 2017-02-06 /pmc/articles/PMC5391860/ /pubmed/28257008 http://dx.doi.org/10.1107/S2053229617000870 Text en © Pöppler et al. 2017 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/2.0/uk/
spellingShingle Nmr Crystallography
Pöppler, Ann-Christin
Corlett, Emily K.
Pearce, Harriet
Seymour, Mark P.
Reid, Matthew
Montgomery, Mark G.
Brown, Steven P.
Single-crystal X-ray diffraction and NMR crystallography of a 1:1 cocrystal of di­thia­non and pyrimethanil
title Single-crystal X-ray diffraction and NMR crystallography of a 1:1 cocrystal of di­thia­non and pyrimethanil
title_full Single-crystal X-ray diffraction and NMR crystallography of a 1:1 cocrystal of di­thia­non and pyrimethanil
title_fullStr Single-crystal X-ray diffraction and NMR crystallography of a 1:1 cocrystal of di­thia­non and pyrimethanil
title_full_unstemmed Single-crystal X-ray diffraction and NMR crystallography of a 1:1 cocrystal of di­thia­non and pyrimethanil
title_short Single-crystal X-ray diffraction and NMR crystallography of a 1:1 cocrystal of di­thia­non and pyrimethanil
title_sort single-crystal x-ray diffraction and nmr crystallography of a 1:1 cocrystal of di­thia­non and pyrimethanil
topic Nmr Crystallography
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5391860/
https://www.ncbi.nlm.nih.gov/pubmed/28257008
http://dx.doi.org/10.1107/S2053229617000870
work_keys_str_mv AT popplerannchristin singlecrystalxraydiffractionandnmrcrystallographyofa11cocrystalofdithianonandpyrimethanil
AT corlettemilyk singlecrystalxraydiffractionandnmrcrystallographyofa11cocrystalofdithianonandpyrimethanil
AT pearceharriet singlecrystalxraydiffractionandnmrcrystallographyofa11cocrystalofdithianonandpyrimethanil
AT seymourmarkp singlecrystalxraydiffractionandnmrcrystallographyofa11cocrystalofdithianonandpyrimethanil
AT reidmatthew singlecrystalxraydiffractionandnmrcrystallographyofa11cocrystalofdithianonandpyrimethanil
AT montgomerymarkg singlecrystalxraydiffractionandnmrcrystallographyofa11cocrystalofdithianonandpyrimethanil
AT brownstevenp singlecrystalxraydiffractionandnmrcrystallographyofa11cocrystalofdithianonandpyrimethanil