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Unified Least Squares Methods for the Evaluation of Diagnostic Tests With the Gold Standard

The article proposes a unified least squares method to estimate the receiver operating characteristic (ROC) parameters for continuous and ordinal diagnostic tests, such as cancer biomarkers. The method is based on a linear model framework using the empirically estimated sensitivities and specificiti...

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Detalles Bibliográficos
Autores principales: Tang, Liansheng Larry, Yuan, Ao, Collins, John, Che, Xuan, Chan, Leighton
Formato: Online Artículo Texto
Lenguaje:English
Publicado: SAGE Publications 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5392027/
https://www.ncbi.nlm.nih.gov/pubmed/28469385
http://dx.doi.org/10.1177/1176935116686063
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author Tang, Liansheng Larry
Yuan, Ao
Collins, John
Che, Xuan
Chan, Leighton
author_facet Tang, Liansheng Larry
Yuan, Ao
Collins, John
Che, Xuan
Chan, Leighton
author_sort Tang, Liansheng Larry
collection PubMed
description The article proposes a unified least squares method to estimate the receiver operating characteristic (ROC) parameters for continuous and ordinal diagnostic tests, such as cancer biomarkers. The method is based on a linear model framework using the empirically estimated sensitivities and specificities as input “data.” It gives consistent estimates for regression and accuracy parameters when the underlying continuous test results are normally distributed after some monotonic transformation. The key difference between the proposed method and the method of Tang and Zhou lies in the response variable. The response variable in the latter is transformed empirical ROC curves at different thresholds. It takes on many values for continuous test results, but few values for ordinal test results. The limited number of values for the response variable makes it impractical for ordinal data. However, the response variable in the proposed method takes on many more distinct values so that the method yields valid estimates for ordinal data. Extensive simulation studies are conducted to investigate and compare the finite sample performance of the proposed method with an existing method, and the method is then used to analyze 2 real cancer diagnostic example as an illustration.
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spelling pubmed-53920272017-05-03 Unified Least Squares Methods for the Evaluation of Diagnostic Tests With the Gold Standard Tang, Liansheng Larry Yuan, Ao Collins, John Che, Xuan Chan, Leighton Cancer Inform Review The article proposes a unified least squares method to estimate the receiver operating characteristic (ROC) parameters for continuous and ordinal diagnostic tests, such as cancer biomarkers. The method is based on a linear model framework using the empirically estimated sensitivities and specificities as input “data.” It gives consistent estimates for regression and accuracy parameters when the underlying continuous test results are normally distributed after some monotonic transformation. The key difference between the proposed method and the method of Tang and Zhou lies in the response variable. The response variable in the latter is transformed empirical ROC curves at different thresholds. It takes on many values for continuous test results, but few values for ordinal test results. The limited number of values for the response variable makes it impractical for ordinal data. However, the response variable in the proposed method takes on many more distinct values so that the method yields valid estimates for ordinal data. Extensive simulation studies are conducted to investigate and compare the finite sample performance of the proposed method with an existing method, and the method is then used to analyze 2 real cancer diagnostic example as an illustration. SAGE Publications 2017-02-03 /pmc/articles/PMC5392027/ /pubmed/28469385 http://dx.doi.org/10.1177/1176935116686063 Text en © The Author(s) 2017 http://creativecommons.org/licenses/by-nc/3.0/ This article is distributed under the terms of the Creative Commons Attribution-NonCommercial 3.0 License (http://www.creativecommons.org/licenses/by-nc/3.0/) which permits non-commercial use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access page(https://us.sagepub.com/en-us/nam/open-access-at-sage).
spellingShingle Review
Tang, Liansheng Larry
Yuan, Ao
Collins, John
Che, Xuan
Chan, Leighton
Unified Least Squares Methods for the Evaluation of Diagnostic Tests With the Gold Standard
title Unified Least Squares Methods for the Evaluation of Diagnostic Tests With the Gold Standard
title_full Unified Least Squares Methods for the Evaluation of Diagnostic Tests With the Gold Standard
title_fullStr Unified Least Squares Methods for the Evaluation of Diagnostic Tests With the Gold Standard
title_full_unstemmed Unified Least Squares Methods for the Evaluation of Diagnostic Tests With the Gold Standard
title_short Unified Least Squares Methods for the Evaluation of Diagnostic Tests With the Gold Standard
title_sort unified least squares methods for the evaluation of diagnostic tests with the gold standard
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5392027/
https://www.ncbi.nlm.nih.gov/pubmed/28469385
http://dx.doi.org/10.1177/1176935116686063
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