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Open data and digital morphology

Over the past two decades, the development of methods for visualizing and analysing specimens digitally, in three and even four dimensions, has transformed the study of living and fossil organisms. However, the initial promise that the widespread application of such methods would facilitate access t...

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Autores principales: Davies, Thomas G., Rahman, Imran A., Lautenschlager, Stephan, Cunningham, John A., Asher, Robert J., Barrett, Paul M., Bates, Karl T., Bengtson, Stefan, Benson, Roger B. J., Boyer, Doug M., Braga, José, Bright, Jen A., Claessens, Leon P. A. M., Cox, Philip G., Dong, Xi-Ping, Evans, Alistair R., Falkingham, Peter L., Friedman, Matt, Garwood, Russell J., Goswami, Anjali, Hutchinson, John R., Jeffery, Nathan S., Johanson, Zerina, Lebrun, Renaud, Martínez-Pérez, Carlos, Marugán-Lobón, Jesús, O'Higgins, Paul M., Metscher, Brian, Orliac, Maëva, Rowe, Timothy B., Rücklin, Martin, Sánchez-Villagra, Marcelo R., Shubin, Neil H., Smith, Selena Y., Starck, J. Matthias, Stringer, Chris, Summers, Adam P., Sutton, Mark D., Walsh, Stig A., Weisbecker, Vera, Witmer, Lawrence M., Wroe, Stephen, Yin, Zongjun, Rayfield, Emily J., Donoghue, Philip C. J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5394671/
https://www.ncbi.nlm.nih.gov/pubmed/28404779
http://dx.doi.org/10.1098/rspb.2017.0194
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author Davies, Thomas G.
Rahman, Imran A.
Lautenschlager, Stephan
Cunningham, John A.
Asher, Robert J.
Barrett, Paul M.
Bates, Karl T.
Bengtson, Stefan
Benson, Roger B. J.
Boyer, Doug M.
Braga, José
Bright, Jen A.
Claessens, Leon P. A. M.
Cox, Philip G.
Dong, Xi-Ping
Evans, Alistair R.
Falkingham, Peter L.
Friedman, Matt
Garwood, Russell J.
Goswami, Anjali
Hutchinson, John R.
Jeffery, Nathan S.
Johanson, Zerina
Lebrun, Renaud
Martínez-Pérez, Carlos
Marugán-Lobón, Jesús
O'Higgins, Paul M.
Metscher, Brian
Orliac, Maëva
Rowe, Timothy B.
Rücklin, Martin
Sánchez-Villagra, Marcelo R.
Shubin, Neil H.
Smith, Selena Y.
Starck, J. Matthias
Stringer, Chris
Summers, Adam P.
Sutton, Mark D.
Walsh, Stig A.
Weisbecker, Vera
Witmer, Lawrence M.
Wroe, Stephen
Yin, Zongjun
Rayfield, Emily J.
Donoghue, Philip C. J.
author_facet Davies, Thomas G.
Rahman, Imran A.
Lautenschlager, Stephan
Cunningham, John A.
Asher, Robert J.
Barrett, Paul M.
Bates, Karl T.
Bengtson, Stefan
Benson, Roger B. J.
Boyer, Doug M.
Braga, José
Bright, Jen A.
Claessens, Leon P. A. M.
Cox, Philip G.
Dong, Xi-Ping
Evans, Alistair R.
Falkingham, Peter L.
Friedman, Matt
Garwood, Russell J.
Goswami, Anjali
Hutchinson, John R.
Jeffery, Nathan S.
Johanson, Zerina
Lebrun, Renaud
Martínez-Pérez, Carlos
Marugán-Lobón, Jesús
O'Higgins, Paul M.
Metscher, Brian
Orliac, Maëva
Rowe, Timothy B.
Rücklin, Martin
Sánchez-Villagra, Marcelo R.
Shubin, Neil H.
Smith, Selena Y.
Starck, J. Matthias
Stringer, Chris
Summers, Adam P.
Sutton, Mark D.
Walsh, Stig A.
Weisbecker, Vera
Witmer, Lawrence M.
Wroe, Stephen
Yin, Zongjun
Rayfield, Emily J.
Donoghue, Philip C. J.
author_sort Davies, Thomas G.
collection PubMed
description Over the past two decades, the development of methods for visualizing and analysing specimens digitally, in three and even four dimensions, has transformed the study of living and fossil organisms. However, the initial promise that the widespread application of such methods would facilitate access to the underlying digital data has not been fully achieved. The underlying datasets for many published studies are not readily or freely available, introducing a barrier to verification and reproducibility, and the reuse of data. There is no current agreement or policy on the amount and type of data that should be made available alongside studies that use, and in some cases are wholly reliant on, digital morphology. Here, we propose a set of recommendations for minimum standards and additional best practice for three-dimensional digital data publication, and review the issues around data storage, management and accessibility.
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spelling pubmed-53946712017-04-24 Open data and digital morphology Davies, Thomas G. Rahman, Imran A. Lautenschlager, Stephan Cunningham, John A. Asher, Robert J. Barrett, Paul M. Bates, Karl T. Bengtson, Stefan Benson, Roger B. J. Boyer, Doug M. Braga, José Bright, Jen A. Claessens, Leon P. A. M. Cox, Philip G. Dong, Xi-Ping Evans, Alistair R. Falkingham, Peter L. Friedman, Matt Garwood, Russell J. Goswami, Anjali Hutchinson, John R. Jeffery, Nathan S. Johanson, Zerina Lebrun, Renaud Martínez-Pérez, Carlos Marugán-Lobón, Jesús O'Higgins, Paul M. Metscher, Brian Orliac, Maëva Rowe, Timothy B. Rücklin, Martin Sánchez-Villagra, Marcelo R. Shubin, Neil H. Smith, Selena Y. Starck, J. Matthias Stringer, Chris Summers, Adam P. Sutton, Mark D. Walsh, Stig A. Weisbecker, Vera Witmer, Lawrence M. Wroe, Stephen Yin, Zongjun Rayfield, Emily J. Donoghue, Philip C. J. Proc Biol Sci Morphology and Biomechanics Over the past two decades, the development of methods for visualizing and analysing specimens digitally, in three and even four dimensions, has transformed the study of living and fossil organisms. However, the initial promise that the widespread application of such methods would facilitate access to the underlying digital data has not been fully achieved. The underlying datasets for many published studies are not readily or freely available, introducing a barrier to verification and reproducibility, and the reuse of data. There is no current agreement or policy on the amount and type of data that should be made available alongside studies that use, and in some cases are wholly reliant on, digital morphology. Here, we propose a set of recommendations for minimum standards and additional best practice for three-dimensional digital data publication, and review the issues around data storage, management and accessibility. The Royal Society 2017-04-12 2017-04-12 /pmc/articles/PMC5394671/ /pubmed/28404779 http://dx.doi.org/10.1098/rspb.2017.0194 Text en © 2017 The Authors. http://creativecommons.org/licenses/by/4.0/ Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited.
spellingShingle Morphology and Biomechanics
Davies, Thomas G.
Rahman, Imran A.
Lautenschlager, Stephan
Cunningham, John A.
Asher, Robert J.
Barrett, Paul M.
Bates, Karl T.
Bengtson, Stefan
Benson, Roger B. J.
Boyer, Doug M.
Braga, José
Bright, Jen A.
Claessens, Leon P. A. M.
Cox, Philip G.
Dong, Xi-Ping
Evans, Alistair R.
Falkingham, Peter L.
Friedman, Matt
Garwood, Russell J.
Goswami, Anjali
Hutchinson, John R.
Jeffery, Nathan S.
Johanson, Zerina
Lebrun, Renaud
Martínez-Pérez, Carlos
Marugán-Lobón, Jesús
O'Higgins, Paul M.
Metscher, Brian
Orliac, Maëva
Rowe, Timothy B.
Rücklin, Martin
Sánchez-Villagra, Marcelo R.
Shubin, Neil H.
Smith, Selena Y.
Starck, J. Matthias
Stringer, Chris
Summers, Adam P.
Sutton, Mark D.
Walsh, Stig A.
Weisbecker, Vera
Witmer, Lawrence M.
Wroe, Stephen
Yin, Zongjun
Rayfield, Emily J.
Donoghue, Philip C. J.
Open data and digital morphology
title Open data and digital morphology
title_full Open data and digital morphology
title_fullStr Open data and digital morphology
title_full_unstemmed Open data and digital morphology
title_short Open data and digital morphology
title_sort open data and digital morphology
topic Morphology and Biomechanics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5394671/
https://www.ncbi.nlm.nih.gov/pubmed/28404779
http://dx.doi.org/10.1098/rspb.2017.0194
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