Cargando…
Open data and digital morphology
Over the past two decades, the development of methods for visualizing and analysing specimens digitally, in three and even four dimensions, has transformed the study of living and fossil organisms. However, the initial promise that the widespread application of such methods would facilitate access t...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society
2017
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5394671/ https://www.ncbi.nlm.nih.gov/pubmed/28404779 http://dx.doi.org/10.1098/rspb.2017.0194 |
_version_ | 1783229760752582656 |
---|---|
author | Davies, Thomas G. Rahman, Imran A. Lautenschlager, Stephan Cunningham, John A. Asher, Robert J. Barrett, Paul M. Bates, Karl T. Bengtson, Stefan Benson, Roger B. J. Boyer, Doug M. Braga, José Bright, Jen A. Claessens, Leon P. A. M. Cox, Philip G. Dong, Xi-Ping Evans, Alistair R. Falkingham, Peter L. Friedman, Matt Garwood, Russell J. Goswami, Anjali Hutchinson, John R. Jeffery, Nathan S. Johanson, Zerina Lebrun, Renaud Martínez-Pérez, Carlos Marugán-Lobón, Jesús O'Higgins, Paul M. Metscher, Brian Orliac, Maëva Rowe, Timothy B. Rücklin, Martin Sánchez-Villagra, Marcelo R. Shubin, Neil H. Smith, Selena Y. Starck, J. Matthias Stringer, Chris Summers, Adam P. Sutton, Mark D. Walsh, Stig A. Weisbecker, Vera Witmer, Lawrence M. Wroe, Stephen Yin, Zongjun Rayfield, Emily J. Donoghue, Philip C. J. |
author_facet | Davies, Thomas G. Rahman, Imran A. Lautenschlager, Stephan Cunningham, John A. Asher, Robert J. Barrett, Paul M. Bates, Karl T. Bengtson, Stefan Benson, Roger B. J. Boyer, Doug M. Braga, José Bright, Jen A. Claessens, Leon P. A. M. Cox, Philip G. Dong, Xi-Ping Evans, Alistair R. Falkingham, Peter L. Friedman, Matt Garwood, Russell J. Goswami, Anjali Hutchinson, John R. Jeffery, Nathan S. Johanson, Zerina Lebrun, Renaud Martínez-Pérez, Carlos Marugán-Lobón, Jesús O'Higgins, Paul M. Metscher, Brian Orliac, Maëva Rowe, Timothy B. Rücklin, Martin Sánchez-Villagra, Marcelo R. Shubin, Neil H. Smith, Selena Y. Starck, J. Matthias Stringer, Chris Summers, Adam P. Sutton, Mark D. Walsh, Stig A. Weisbecker, Vera Witmer, Lawrence M. Wroe, Stephen Yin, Zongjun Rayfield, Emily J. Donoghue, Philip C. J. |
author_sort | Davies, Thomas G. |
collection | PubMed |
description | Over the past two decades, the development of methods for visualizing and analysing specimens digitally, in three and even four dimensions, has transformed the study of living and fossil organisms. However, the initial promise that the widespread application of such methods would facilitate access to the underlying digital data has not been fully achieved. The underlying datasets for many published studies are not readily or freely available, introducing a barrier to verification and reproducibility, and the reuse of data. There is no current agreement or policy on the amount and type of data that should be made available alongside studies that use, and in some cases are wholly reliant on, digital morphology. Here, we propose a set of recommendations for minimum standards and additional best practice for three-dimensional digital data publication, and review the issues around data storage, management and accessibility. |
format | Online Article Text |
id | pubmed-5394671 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | The Royal Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-53946712017-04-24 Open data and digital morphology Davies, Thomas G. Rahman, Imran A. Lautenschlager, Stephan Cunningham, John A. Asher, Robert J. Barrett, Paul M. Bates, Karl T. Bengtson, Stefan Benson, Roger B. J. Boyer, Doug M. Braga, José Bright, Jen A. Claessens, Leon P. A. M. Cox, Philip G. Dong, Xi-Ping Evans, Alistair R. Falkingham, Peter L. Friedman, Matt Garwood, Russell J. Goswami, Anjali Hutchinson, John R. Jeffery, Nathan S. Johanson, Zerina Lebrun, Renaud Martínez-Pérez, Carlos Marugán-Lobón, Jesús O'Higgins, Paul M. Metscher, Brian Orliac, Maëva Rowe, Timothy B. Rücklin, Martin Sánchez-Villagra, Marcelo R. Shubin, Neil H. Smith, Selena Y. Starck, J. Matthias Stringer, Chris Summers, Adam P. Sutton, Mark D. Walsh, Stig A. Weisbecker, Vera Witmer, Lawrence M. Wroe, Stephen Yin, Zongjun Rayfield, Emily J. Donoghue, Philip C. J. Proc Biol Sci Morphology and Biomechanics Over the past two decades, the development of methods for visualizing and analysing specimens digitally, in three and even four dimensions, has transformed the study of living and fossil organisms. However, the initial promise that the widespread application of such methods would facilitate access to the underlying digital data has not been fully achieved. The underlying datasets for many published studies are not readily or freely available, introducing a barrier to verification and reproducibility, and the reuse of data. There is no current agreement or policy on the amount and type of data that should be made available alongside studies that use, and in some cases are wholly reliant on, digital morphology. Here, we propose a set of recommendations for minimum standards and additional best practice for three-dimensional digital data publication, and review the issues around data storage, management and accessibility. The Royal Society 2017-04-12 2017-04-12 /pmc/articles/PMC5394671/ /pubmed/28404779 http://dx.doi.org/10.1098/rspb.2017.0194 Text en © 2017 The Authors. http://creativecommons.org/licenses/by/4.0/ Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited. |
spellingShingle | Morphology and Biomechanics Davies, Thomas G. Rahman, Imran A. Lautenschlager, Stephan Cunningham, John A. Asher, Robert J. Barrett, Paul M. Bates, Karl T. Bengtson, Stefan Benson, Roger B. J. Boyer, Doug M. Braga, José Bright, Jen A. Claessens, Leon P. A. M. Cox, Philip G. Dong, Xi-Ping Evans, Alistair R. Falkingham, Peter L. Friedman, Matt Garwood, Russell J. Goswami, Anjali Hutchinson, John R. Jeffery, Nathan S. Johanson, Zerina Lebrun, Renaud Martínez-Pérez, Carlos Marugán-Lobón, Jesús O'Higgins, Paul M. Metscher, Brian Orliac, Maëva Rowe, Timothy B. Rücklin, Martin Sánchez-Villagra, Marcelo R. Shubin, Neil H. Smith, Selena Y. Starck, J. Matthias Stringer, Chris Summers, Adam P. Sutton, Mark D. Walsh, Stig A. Weisbecker, Vera Witmer, Lawrence M. Wroe, Stephen Yin, Zongjun Rayfield, Emily J. Donoghue, Philip C. J. Open data and digital morphology |
title | Open data and digital morphology |
title_full | Open data and digital morphology |
title_fullStr | Open data and digital morphology |
title_full_unstemmed | Open data and digital morphology |
title_short | Open data and digital morphology |
title_sort | open data and digital morphology |
topic | Morphology and Biomechanics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5394671/ https://www.ncbi.nlm.nih.gov/pubmed/28404779 http://dx.doi.org/10.1098/rspb.2017.0194 |
work_keys_str_mv | AT daviesthomasg opendataanddigitalmorphology AT rahmanimrana opendataanddigitalmorphology AT lautenschlagerstephan opendataanddigitalmorphology AT cunninghamjohna opendataanddigitalmorphology AT asherrobertj opendataanddigitalmorphology AT barrettpaulm opendataanddigitalmorphology AT bateskarlt opendataanddigitalmorphology AT bengtsonstefan opendataanddigitalmorphology AT bensonrogerbj opendataanddigitalmorphology AT boyerdougm opendataanddigitalmorphology AT bragajose opendataanddigitalmorphology AT brightjena opendataanddigitalmorphology AT claessensleonpam opendataanddigitalmorphology AT coxphilipg opendataanddigitalmorphology AT dongxiping opendataanddigitalmorphology AT evansalistairr opendataanddigitalmorphology AT falkinghampeterl opendataanddigitalmorphology AT friedmanmatt opendataanddigitalmorphology AT garwoodrussellj opendataanddigitalmorphology AT goswamianjali opendataanddigitalmorphology AT hutchinsonjohnr opendataanddigitalmorphology AT jefferynathans opendataanddigitalmorphology AT johansonzerina opendataanddigitalmorphology AT lebrunrenaud opendataanddigitalmorphology AT martinezperezcarlos opendataanddigitalmorphology AT maruganlobonjesus opendataanddigitalmorphology AT ohigginspaulm opendataanddigitalmorphology AT metscherbrian opendataanddigitalmorphology AT orliacmaeva opendataanddigitalmorphology AT rowetimothyb opendataanddigitalmorphology AT rucklinmartin opendataanddigitalmorphology AT sanchezvillagramarcelor opendataanddigitalmorphology AT shubinneilh opendataanddigitalmorphology AT smithselenay opendataanddigitalmorphology AT starckjmatthias opendataanddigitalmorphology AT stringerchris opendataanddigitalmorphology AT summersadamp opendataanddigitalmorphology AT suttonmarkd opendataanddigitalmorphology AT walshstiga opendataanddigitalmorphology AT weisbeckervera opendataanddigitalmorphology AT witmerlawrencem opendataanddigitalmorphology AT wroestephen opendataanddigitalmorphology AT yinzongjun opendataanddigitalmorphology AT rayfieldemilyj opendataanddigitalmorphology AT donoghuephilipcj opendataanddigitalmorphology |