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A Method to Categorize 2-Dimensional Patterns Using Statistics of Spatial Organization
We developed a measurement framework of spatial organization to categorize 2-dimensional patterns from 2 multiscalar biological architectures. We propose that underlying shapes of biological entities can be approached using the statistical concept of degrees of freedom, defining it through expansion...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
SAGE Publications
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5395257/ https://www.ncbi.nlm.nih.gov/pubmed/28469379 http://dx.doi.org/10.1177/1176934317697978 |
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author | López-Sauceda, Juan Rueda-Contreras, Mara D |
author_facet | López-Sauceda, Juan Rueda-Contreras, Mara D |
author_sort | López-Sauceda, Juan |
collection | PubMed |
description | We developed a measurement framework of spatial organization to categorize 2-dimensional patterns from 2 multiscalar biological architectures. We propose that underlying shapes of biological entities can be approached using the statistical concept of degrees of freedom, defining it through expansion of area variability in a pattern. To help scope this suggestion, we developed a mathematical argument recognizing the deep foundations of area variability in a polygonal pattern (spatial heterogeneity). This measure uses a parameter called eutacticity. Our measuring platform of spatial heterogeneity can assign particular ranges of distribution of spatial areas for 2 biological architectures: ecological patterns of Namibia fairy circles and epithelial sheets. The spatial organizations of our 2 analyzed biological architectures are demarcated by being in a particular position among spatial order and disorder. We suggest that this theoretical platform can give us some insights about the nature of shapes in biological systems to understand organizational constraints. |
format | Online Article Text |
id | pubmed-5395257 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | SAGE Publications |
record_format | MEDLINE/PubMed |
spelling | pubmed-53952572017-05-03 A Method to Categorize 2-Dimensional Patterns Using Statistics of Spatial Organization López-Sauceda, Juan Rueda-Contreras, Mara D Evol Bioinform Online Original Research We developed a measurement framework of spatial organization to categorize 2-dimensional patterns from 2 multiscalar biological architectures. We propose that underlying shapes of biological entities can be approached using the statistical concept of degrees of freedom, defining it through expansion of area variability in a pattern. To help scope this suggestion, we developed a mathematical argument recognizing the deep foundations of area variability in a polygonal pattern (spatial heterogeneity). This measure uses a parameter called eutacticity. Our measuring platform of spatial heterogeneity can assign particular ranges of distribution of spatial areas for 2 biological architectures: ecological patterns of Namibia fairy circles and epithelial sheets. The spatial organizations of our 2 analyzed biological architectures are demarcated by being in a particular position among spatial order and disorder. We suggest that this theoretical platform can give us some insights about the nature of shapes in biological systems to understand organizational constraints. SAGE Publications 2017-03-10 /pmc/articles/PMC5395257/ /pubmed/28469379 http://dx.doi.org/10.1177/1176934317697978 Text en © The Author(s) 2017 http://creativecommons.org/licenses/by-nc/4.0/ This article is distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 License (http://www.creativecommons.org/licenses/by-nc/4.0/) which permits non-commercial use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access page(https://us.sagepub.com/en-us/nam/open-access-at-sage). |
spellingShingle | Original Research López-Sauceda, Juan Rueda-Contreras, Mara D A Method to Categorize 2-Dimensional Patterns Using Statistics of Spatial Organization |
title | A Method to Categorize 2-Dimensional Patterns Using Statistics of Spatial Organization |
title_full | A Method to Categorize 2-Dimensional Patterns Using Statistics of Spatial Organization |
title_fullStr | A Method to Categorize 2-Dimensional Patterns Using Statistics of Spatial Organization |
title_full_unstemmed | A Method to Categorize 2-Dimensional Patterns Using Statistics of Spatial Organization |
title_short | A Method to Categorize 2-Dimensional Patterns Using Statistics of Spatial Organization |
title_sort | method to categorize 2-dimensional patterns using statistics of spatial organization |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5395257/ https://www.ncbi.nlm.nih.gov/pubmed/28469379 http://dx.doi.org/10.1177/1176934317697978 |
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