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Towards automatic pulmonary nodule management in lung cancer screening with deep learning

The introduction of lung cancer screening programs will produce an unprecedented amount of chest CT scans in the near future, which radiologists will have to read in order to decide on a patient follow-up strategy. According to the current guidelines, the workup of screen-detected nodules strongly r...

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Autores principales: Ciompi, Francesco, Chung, Kaman, van Riel, Sarah J., Setio, Arnaud Arindra Adiyoso, Gerke, Paul K., Jacobs, Colin, Th. Scholten, Ernst, Schaefer-Prokop, Cornelia, Wille, Mathilde M. W., Marchianò, Alfonso, Pastorino, Ugo, Prokop, Mathias, van Ginneken, Bram
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5395959/
https://www.ncbi.nlm.nih.gov/pubmed/28422152
http://dx.doi.org/10.1038/srep46479
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author Ciompi, Francesco
Chung, Kaman
van Riel, Sarah J.
Setio, Arnaud Arindra Adiyoso
Gerke, Paul K.
Jacobs, Colin
Th. Scholten, Ernst
Schaefer-Prokop, Cornelia
Wille, Mathilde M. W.
Marchianò, Alfonso
Pastorino, Ugo
Prokop, Mathias
van Ginneken, Bram
author_facet Ciompi, Francesco
Chung, Kaman
van Riel, Sarah J.
Setio, Arnaud Arindra Adiyoso
Gerke, Paul K.
Jacobs, Colin
Th. Scholten, Ernst
Schaefer-Prokop, Cornelia
Wille, Mathilde M. W.
Marchianò, Alfonso
Pastorino, Ugo
Prokop, Mathias
van Ginneken, Bram
author_sort Ciompi, Francesco
collection PubMed
description The introduction of lung cancer screening programs will produce an unprecedented amount of chest CT scans in the near future, which radiologists will have to read in order to decide on a patient follow-up strategy. According to the current guidelines, the workup of screen-detected nodules strongly relies on nodule size and nodule type. In this paper, we present a deep learning system based on multi-stream multi-scale convolutional networks, which automatically classifies all nodule types relevant for nodule workup. The system processes raw CT data containing a nodule without the need for any additional information such as nodule segmentation or nodule size and learns a representation of 3D data by analyzing an arbitrary number of 2D views of a given nodule. The deep learning system was trained with data from the Italian MILD screening trial and validated on an independent set of data from the Danish DLCST screening trial. We analyze the advantage of processing nodules at multiple scales with a multi-stream convolutional network architecture, and we show that the proposed deep learning system achieves performance at classifying nodule type that surpasses the one of classical machine learning approaches and is within the inter-observer variability among four experienced human observers.
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spelling pubmed-53959592017-04-21 Towards automatic pulmonary nodule management in lung cancer screening with deep learning Ciompi, Francesco Chung, Kaman van Riel, Sarah J. Setio, Arnaud Arindra Adiyoso Gerke, Paul K. Jacobs, Colin Th. Scholten, Ernst Schaefer-Prokop, Cornelia Wille, Mathilde M. W. Marchianò, Alfonso Pastorino, Ugo Prokop, Mathias van Ginneken, Bram Sci Rep Article The introduction of lung cancer screening programs will produce an unprecedented amount of chest CT scans in the near future, which radiologists will have to read in order to decide on a patient follow-up strategy. According to the current guidelines, the workup of screen-detected nodules strongly relies on nodule size and nodule type. In this paper, we present a deep learning system based on multi-stream multi-scale convolutional networks, which automatically classifies all nodule types relevant for nodule workup. The system processes raw CT data containing a nodule without the need for any additional information such as nodule segmentation or nodule size and learns a representation of 3D data by analyzing an arbitrary number of 2D views of a given nodule. The deep learning system was trained with data from the Italian MILD screening trial and validated on an independent set of data from the Danish DLCST screening trial. We analyze the advantage of processing nodules at multiple scales with a multi-stream convolutional network architecture, and we show that the proposed deep learning system achieves performance at classifying nodule type that surpasses the one of classical machine learning approaches and is within the inter-observer variability among four experienced human observers. Nature Publishing Group 2017-04-19 /pmc/articles/PMC5395959/ /pubmed/28422152 http://dx.doi.org/10.1038/srep46479 Text en Copyright © 2017, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Ciompi, Francesco
Chung, Kaman
van Riel, Sarah J.
Setio, Arnaud Arindra Adiyoso
Gerke, Paul K.
Jacobs, Colin
Th. Scholten, Ernst
Schaefer-Prokop, Cornelia
Wille, Mathilde M. W.
Marchianò, Alfonso
Pastorino, Ugo
Prokop, Mathias
van Ginneken, Bram
Towards automatic pulmonary nodule management in lung cancer screening with deep learning
title Towards automatic pulmonary nodule management in lung cancer screening with deep learning
title_full Towards automatic pulmonary nodule management in lung cancer screening with deep learning
title_fullStr Towards automatic pulmonary nodule management in lung cancer screening with deep learning
title_full_unstemmed Towards automatic pulmonary nodule management in lung cancer screening with deep learning
title_short Towards automatic pulmonary nodule management in lung cancer screening with deep learning
title_sort towards automatic pulmonary nodule management in lung cancer screening with deep learning
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5395959/
https://www.ncbi.nlm.nih.gov/pubmed/28422152
http://dx.doi.org/10.1038/srep46479
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