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Consensus-Driven Development of a Terminology for Biobanking, the Duke Experience

Biobanking at Duke University has existed for decades and has grown over time in silos and based on specialized needs, as is true with most biomedical research centers. These silos developed informatics systems to support their own individual requirements, with no regard for semantic or syntactic in...

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Autores principales: Ellis, Helena, Joshi, Mary-Beth, Lynn, Aenoch J., Walden, Anita
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Mary Ann Liebert, Inc. 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5397220/
https://www.ncbi.nlm.nih.gov/pubmed/28338350
http://dx.doi.org/10.1089/bio.2016.0092
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author Ellis, Helena
Joshi, Mary-Beth
Lynn, Aenoch J.
Walden, Anita
author_facet Ellis, Helena
Joshi, Mary-Beth
Lynn, Aenoch J.
Walden, Anita
author_sort Ellis, Helena
collection PubMed
description Biobanking at Duke University has existed for decades and has grown over time in silos and based on specialized needs, as is true with most biomedical research centers. These silos developed informatics systems to support their own individual requirements, with no regard for semantic or syntactic interoperability. Duke undertook an initiative to implement an enterprise-wide biobanking information system to serve its many diverse biobanking entities. A significant part of this initiative was the development of a common terminology for use in the commercial software platform. Common terminology provides the foundation for interoperability across biobanks for data and information sharing. We engaged experts in research, informatics, and biobanking through a consensus-driven process to agree on 361 terms and their definitions that encompass the lifecycle of a biospecimen. Existing standards, common terms, and data elements from published articles provided a foundation on which to build the biobanking terminology; a broader set of stakeholders then provided additional input and feedback in a secondary vetting process. The resulting standardized biobanking terminology is now available for sharing with the biobanking community to serve as a foundation for other institutions who are considering a similar initiative.
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spelling pubmed-53972202017-04-27 Consensus-Driven Development of a Terminology for Biobanking, the Duke Experience Ellis, Helena Joshi, Mary-Beth Lynn, Aenoch J. Walden, Anita Biopreserv Biobank Original Articles Biobanking at Duke University has existed for decades and has grown over time in silos and based on specialized needs, as is true with most biomedical research centers. These silos developed informatics systems to support their own individual requirements, with no regard for semantic or syntactic interoperability. Duke undertook an initiative to implement an enterprise-wide biobanking information system to serve its many diverse biobanking entities. A significant part of this initiative was the development of a common terminology for use in the commercial software platform. Common terminology provides the foundation for interoperability across biobanks for data and information sharing. We engaged experts in research, informatics, and biobanking through a consensus-driven process to agree on 361 terms and their definitions that encompass the lifecycle of a biospecimen. Existing standards, common terms, and data elements from published articles provided a foundation on which to build the biobanking terminology; a broader set of stakeholders then provided additional input and feedback in a secondary vetting process. The resulting standardized biobanking terminology is now available for sharing with the biobanking community to serve as a foundation for other institutions who are considering a similar initiative. Mary Ann Liebert, Inc. 2017-04-01 2017-04-01 /pmc/articles/PMC5397220/ /pubmed/28338350 http://dx.doi.org/10.1089/bio.2016.0092 Text en © Helena Ellis et al., 2017; Published by Mary Ann Liebert, Inc. This Open Access article is distributed under the terms of the Creative Commons Attribution Noncommercial License (http://creativecommons.org/licenses/by-nc/4.0/) which permits any noncommercial use, distribution, and reproduction in any medium, provided the original author(s) and the source are credited.
spellingShingle Original Articles
Ellis, Helena
Joshi, Mary-Beth
Lynn, Aenoch J.
Walden, Anita
Consensus-Driven Development of a Terminology for Biobanking, the Duke Experience
title Consensus-Driven Development of a Terminology for Biobanking, the Duke Experience
title_full Consensus-Driven Development of a Terminology for Biobanking, the Duke Experience
title_fullStr Consensus-Driven Development of a Terminology for Biobanking, the Duke Experience
title_full_unstemmed Consensus-Driven Development of a Terminology for Biobanking, the Duke Experience
title_short Consensus-Driven Development of a Terminology for Biobanking, the Duke Experience
title_sort consensus-driven development of a terminology for biobanking, the duke experience
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5397220/
https://www.ncbi.nlm.nih.gov/pubmed/28338350
http://dx.doi.org/10.1089/bio.2016.0092
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