Cargando…
Phylogeny, divergence time and historical biogeography of Laetiporus (Basidiomycota, Polyporales)
BACKGROUND: The aim of this study was to characterize the molecular relationship, origin and historical biogeography of the species in important brown rot fungal genus Laetiporus from East Asia, Europe, Pan-America, Hawaii and South Africa. We used six genetic markers to estimate a genus-level phylo...
Autores principales: | , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2017
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5397748/ https://www.ncbi.nlm.nih.gov/pubmed/28424048 http://dx.doi.org/10.1186/s12862-017-0948-5 |
_version_ | 1783230326166781952 |
---|---|
author | Song, Jie Cui, Bao-Kai |
author_facet | Song, Jie Cui, Bao-Kai |
author_sort | Song, Jie |
collection | PubMed |
description | BACKGROUND: The aim of this study was to characterize the molecular relationship, origin and historical biogeography of the species in important brown rot fungal genus Laetiporus from East Asia, Europe, Pan-America, Hawaii and South Africa. We used six genetic markers to estimate a genus-level phylogeny including (1) the internal transcribed spacer (ITS), (2) nuclear large subunit rDNA (nrLSU), (3) nuclear small subunit rDNA (nrSSU), (4) translation elongation factor 1-α (EF-1α), (5) DNA-directed RNA polymerase II subunit 2 (RPB2), and (6) mitochondrial small subunit rDNA (mtSSU). RESULTS: Results of multi-locus phylogenetic analyses show clade support for at least seventeen species-level lineages including two new Laetiporus in China. Molecular dating using BEAST estimated the present crown group diverged approximately 20.16 million years ago (Mya) in the early Miocene. Biogeographic analyses using RASP indicated that Laetiporus most likely originated in temperate zones with East Asia and North America having the highest probability (48%) of being the ancestral area. CONCLUSIONS: Four intercontinental dispersal routes and a possible concealed dispersal route were established for the first time. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12862-017-0948-5) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-5397748 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-53977482017-04-20 Phylogeny, divergence time and historical biogeography of Laetiporus (Basidiomycota, Polyporales) Song, Jie Cui, Bao-Kai BMC Evol Biol Research Article BACKGROUND: The aim of this study was to characterize the molecular relationship, origin and historical biogeography of the species in important brown rot fungal genus Laetiporus from East Asia, Europe, Pan-America, Hawaii and South Africa. We used six genetic markers to estimate a genus-level phylogeny including (1) the internal transcribed spacer (ITS), (2) nuclear large subunit rDNA (nrLSU), (3) nuclear small subunit rDNA (nrSSU), (4) translation elongation factor 1-α (EF-1α), (5) DNA-directed RNA polymerase II subunit 2 (RPB2), and (6) mitochondrial small subunit rDNA (mtSSU). RESULTS: Results of multi-locus phylogenetic analyses show clade support for at least seventeen species-level lineages including two new Laetiporus in China. Molecular dating using BEAST estimated the present crown group diverged approximately 20.16 million years ago (Mya) in the early Miocene. Biogeographic analyses using RASP indicated that Laetiporus most likely originated in temperate zones with East Asia and North America having the highest probability (48%) of being the ancestral area. CONCLUSIONS: Four intercontinental dispersal routes and a possible concealed dispersal route were established for the first time. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12862-017-0948-5) contains supplementary material, which is available to authorized users. BioMed Central 2017-04-20 /pmc/articles/PMC5397748/ /pubmed/28424048 http://dx.doi.org/10.1186/s12862-017-0948-5 Text en © The Author(s). 2017 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Article Song, Jie Cui, Bao-Kai Phylogeny, divergence time and historical biogeography of Laetiporus (Basidiomycota, Polyporales) |
title | Phylogeny, divergence time and historical biogeography of Laetiporus (Basidiomycota, Polyporales) |
title_full | Phylogeny, divergence time and historical biogeography of Laetiporus (Basidiomycota, Polyporales) |
title_fullStr | Phylogeny, divergence time and historical biogeography of Laetiporus (Basidiomycota, Polyporales) |
title_full_unstemmed | Phylogeny, divergence time and historical biogeography of Laetiporus (Basidiomycota, Polyporales) |
title_short | Phylogeny, divergence time and historical biogeography of Laetiporus (Basidiomycota, Polyporales) |
title_sort | phylogeny, divergence time and historical biogeography of laetiporus (basidiomycota, polyporales) |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5397748/ https://www.ncbi.nlm.nih.gov/pubmed/28424048 http://dx.doi.org/10.1186/s12862-017-0948-5 |
work_keys_str_mv | AT songjie phylogenydivergencetimeandhistoricalbiogeographyoflaetiporusbasidiomycotapolyporales AT cuibaokai phylogenydivergencetimeandhistoricalbiogeographyoflaetiporusbasidiomycotapolyporales |