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Dynamic compensation, parameter identifiability, and equivariances

A recent paper by Karin et al. introduced a mathematical notion called dynamical compensation (DC) of biological circuits. DC was shown to play an important role in glucose homeostasis as well as other key physiological regulatory mechanisms. Karin et al. went on to provide a sufficient condition to...

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Autor principal: Sontag, Eduardo D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5398758/
https://www.ncbi.nlm.nih.gov/pubmed/28384175
http://dx.doi.org/10.1371/journal.pcbi.1005447
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author Sontag, Eduardo D.
author_facet Sontag, Eduardo D.
author_sort Sontag, Eduardo D.
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description A recent paper by Karin et al. introduced a mathematical notion called dynamical compensation (DC) of biological circuits. DC was shown to play an important role in glucose homeostasis as well as other key physiological regulatory mechanisms. Karin et al. went on to provide a sufficient condition to test whether a given system has the DC property. Here, we show how DC can be formulated in terms of a well-known concept in systems biology, statistics, and control theory—that of parameter structural non-identifiability. Viewing DC as a parameter identification problem enables one to take advantage of powerful theoretical and computational tools to test a system for DC. We obtain as a special case the sufficient criterion discussed by Karin et al. We also draw connections to system equivalence and to the fold-change detection property.
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spelling pubmed-53987582017-05-15 Dynamic compensation, parameter identifiability, and equivariances Sontag, Eduardo D. PLoS Comput Biol Research Article A recent paper by Karin et al. introduced a mathematical notion called dynamical compensation (DC) of biological circuits. DC was shown to play an important role in glucose homeostasis as well as other key physiological regulatory mechanisms. Karin et al. went on to provide a sufficient condition to test whether a given system has the DC property. Here, we show how DC can be formulated in terms of a well-known concept in systems biology, statistics, and control theory—that of parameter structural non-identifiability. Viewing DC as a parameter identification problem enables one to take advantage of powerful theoretical and computational tools to test a system for DC. We obtain as a special case the sufficient criterion discussed by Karin et al. We also draw connections to system equivalence and to the fold-change detection property. Public Library of Science 2017-04-06 /pmc/articles/PMC5398758/ /pubmed/28384175 http://dx.doi.org/10.1371/journal.pcbi.1005447 Text en © 2017 Eduardo D. Sontag http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Sontag, Eduardo D.
Dynamic compensation, parameter identifiability, and equivariances
title Dynamic compensation, parameter identifiability, and equivariances
title_full Dynamic compensation, parameter identifiability, and equivariances
title_fullStr Dynamic compensation, parameter identifiability, and equivariances
title_full_unstemmed Dynamic compensation, parameter identifiability, and equivariances
title_short Dynamic compensation, parameter identifiability, and equivariances
title_sort dynamic compensation, parameter identifiability, and equivariances
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5398758/
https://www.ncbi.nlm.nih.gov/pubmed/28384175
http://dx.doi.org/10.1371/journal.pcbi.1005447
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