The PEDANT genome database in 2005

The PEDANT genome database (http://pedant.gsf.de) contains pre-computed bioinformatics analyses of publicly available genomes. Its main mission is to provide robust automatic annotation of the vast majority of amino acid sequences, which have not been subjected to in-depth manual curation by human e...

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Detalles Bibliográficos
Autores principales: Riley, M. Louise, Schmidt, Thorsten, Wagner, Christian, Mewes, Hans-Werner, Frishman, Dmitrij
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2005
Materias:
Articles
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC539973/
https://www.ncbi.nlm.nih.gov/pubmed/15608204
http://dx.doi.org/10.1093/nar/gki019
Descripción
Sumario:The PEDANT genome database (http://pedant.gsf.de) contains pre-computed bioinformatics analyses of publicly available genomes. Its main mission is to provide robust automatic annotation of the vast majority of amino acid sequences, which have not been subjected to in-depth manual curation by human experts in high-quality protein sequence databases. By design PEDANT annotation is genome-oriented, making it possible to explore genomic context of gene products, and evaluate functional and structural content of genomes using a category-based query mechanism. At present, the PEDANT database contains exhaustive annotation of over 1 240 000 proteins from 270 eubacterial, 23 archeal and 41 eukaryotic genomes.

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