The ProDom database of protein domain families: more emphasis on 3D

ProDom is a comprehensive database of protein domain families generated from the global comparison of all available protein sequences. Recent improvements include the use of three-dimensional (3D) information from the SCOP database; a completely redesigned web interface (http://www.toulouse.inra.fr/...

Descripción completa

Detalles Bibliográficos
Autores principales: Bru, Catherine, Courcelle, Emmanuel, Carrère, Sébastien, Beausse, Yoann, Dalmar, Sandrine, Kahn, Daniel
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2005
Materias:
Articles
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC539988/
https://www.ncbi.nlm.nih.gov/pubmed/15608179
http://dx.doi.org/10.1093/nar/gki034
Descripción
Sumario:ProDom is a comprehensive database of protein domain families generated from the global comparison of all available protein sequences. Recent improvements include the use of three-dimensional (3D) information from the SCOP database; a completely redesigned web interface (http://www.toulouse.inra.fr/prodom.html); visualization of ProDom domains on 3D structures; coupling of ProDom analysis with the Geno3D homology modelling server; Bayesian inference of evolutionary scenarios for ProDom families. In addition, we have developed ProDom-SG, a ProDom-based server dedicated to the selection of candidate proteins for structural genomics.

Ejemplares similares