The ProDom database of protein domain families: more emphasis on 3D

ProDom is a comprehensive database of protein domain families generated from the global comparison of all available protein sequences. Recent improvements include the use of three-dimensional (3D) information from the SCOP database; a completely redesigned web interface (http://www.toulouse.inra.fr/...

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Detalles Bibliográficos
Autores principales: Bru, Catherine, Courcelle, Emmanuel, Carrère, Sébastien, Beausse, Yoann, Dalmar, Sandrine, Kahn, Daniel
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2005
Materias:
Articles
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC539988/
https://www.ncbi.nlm.nih.gov/pubmed/15608179
http://dx.doi.org/10.1093/nar/gki034
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author Bru, Catherine
Courcelle, Emmanuel
Carrère, Sébastien
Beausse, Yoann
Dalmar, Sandrine
Kahn, Daniel
author_facet Bru, Catherine
Courcelle, Emmanuel
Carrère, Sébastien
Beausse, Yoann
Dalmar, Sandrine
Kahn, Daniel
author_sort Bru, Catherine
collection PubMed
description ProDom is a comprehensive database of protein domain families generated from the global comparison of all available protein sequences. Recent improvements include the use of three-dimensional (3D) information from the SCOP database; a completely redesigned web interface (http://www.toulouse.inra.fr/prodom.html); visualization of ProDom domains on 3D structures; coupling of ProDom analysis with the Geno3D homology modelling server; Bayesian inference of evolutionary scenarios for ProDom families. In addition, we have developed ProDom-SG, a ProDom-based server dedicated to the selection of candidate proteins for structural genomics.
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spelling pubmed-5399882005-01-04 The ProDom database of protein domain families: more emphasis on 3D Bru, Catherine Courcelle, Emmanuel Carrère, Sébastien Beausse, Yoann Dalmar, Sandrine Kahn, Daniel Nucleic Acids Res Articles ProDom is a comprehensive database of protein domain families generated from the global comparison of all available protein sequences. Recent improvements include the use of three-dimensional (3D) information from the SCOP database; a completely redesigned web interface (http://www.toulouse.inra.fr/prodom.html); visualization of ProDom domains on 3D structures; coupling of ProDom analysis with the Geno3D homology modelling server; Bayesian inference of evolutionary scenarios for ProDom families. In addition, we have developed ProDom-SG, a ProDom-based server dedicated to the selection of candidate proteins for structural genomics. Oxford University Press 2005-01-01 2004-12-17 /pmc/articles/PMC539988/ /pubmed/15608179 http://dx.doi.org/10.1093/nar/gki034 Text en Copyright © 2005 Oxford University Press
spellingShingle Articles
Bru, Catherine
Courcelle, Emmanuel
Carrère, Sébastien
Beausse, Yoann
Dalmar, Sandrine
Kahn, Daniel
The ProDom database of protein domain families: more emphasis on 3D
title The ProDom database of protein domain families: more emphasis on 3D
title_full The ProDom database of protein domain families: more emphasis on 3D
title_fullStr The ProDom database of protein domain families: more emphasis on 3D
title_full_unstemmed The ProDom database of protein domain families: more emphasis on 3D
title_short The ProDom database of protein domain families: more emphasis on 3D
title_sort prodom database of protein domain families: more emphasis on 3d
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC539988/
https://www.ncbi.nlm.nih.gov/pubmed/15608179
http://dx.doi.org/10.1093/nar/gki034
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