The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis

The Ribosomal Database Project (RDP-II) provides the research community with aligned and annotated rRNA gene sequences, along with analysis services and a phylogenetically consistent taxonomic framework for these data. Updated monthly, these services are made available through the RDP-II website (ht...

Descripción completa

Detalles Bibliográficos
Autores principales: Cole, J. R., Chai, B., Farris, R. J., Wang, Q., Kulam, S. A., McGarrell, D. M., Garrity, G. M., Tiedje, J. M.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2005
Materias:
Articles
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC539992/
https://www.ncbi.nlm.nih.gov/pubmed/15608200
http://dx.doi.org/10.1093/nar/gki038
_version_ 1782122098575015936
author Cole, J. R.
Chai, B.
Farris, R. J.
Wang, Q.
Kulam, S. A.
McGarrell, D. M.
Garrity, G. M.
Tiedje, J. M.
author_facet Cole, J. R.
Chai, B.
Farris, R. J.
Wang, Q.
Kulam, S. A.
McGarrell, D. M.
Garrity, G. M.
Tiedje, J. M.
author_sort Cole, J. R.
collection PubMed
description The Ribosomal Database Project (RDP-II) provides the research community with aligned and annotated rRNA gene sequences, along with analysis services and a phylogenetically consistent taxonomic framework for these data. Updated monthly, these services are made available through the RDP-II website (http://rdp.cme.msu.edu/). RDP-II release 9.21 (August 2004) contains 101 632 bacterial small subunit rRNA gene sequences in aligned and annotated format. High-throughput tools for initial taxonomic placement, identification of related sequences, probe and primer testing, data navigation and subalignment download are provided. The RDP-II email address for questions or comments is rdpstaff@msu.edu.
format Text
id pubmed-539992
institution National Center for Biotechnology Information
language English
publishDate 2005
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-5399922005-01-04 The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis Cole, J. R. Chai, B. Farris, R. J. Wang, Q. Kulam, S. A. McGarrell, D. M. Garrity, G. M. Tiedje, J. M. Nucleic Acids Res Articles The Ribosomal Database Project (RDP-II) provides the research community with aligned and annotated rRNA gene sequences, along with analysis services and a phylogenetically consistent taxonomic framework for these data. Updated monthly, these services are made available through the RDP-II website (http://rdp.cme.msu.edu/). RDP-II release 9.21 (August 2004) contains 101 632 bacterial small subunit rRNA gene sequences in aligned and annotated format. High-throughput tools for initial taxonomic placement, identification of related sequences, probe and primer testing, data navigation and subalignment download are provided. The RDP-II email address for questions or comments is rdpstaff@msu.edu. Oxford University Press 2005-01-01 2004-12-17 /pmc/articles/PMC539992/ /pubmed/15608200 http://dx.doi.org/10.1093/nar/gki038 Text en Copyright © 2005 Oxford University Press
spellingShingle Articles
Cole, J. R.
Chai, B.
Farris, R. J.
Wang, Q.
Kulam, S. A.
McGarrell, D. M.
Garrity, G. M.
Tiedje, J. M.
The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis
title The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis
title_full The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis
title_fullStr The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis
title_full_unstemmed The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis
title_short The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis
title_sort ribosomal database project (rdp-ii): sequences and tools for high-throughput rrna analysis
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC539992/
https://www.ncbi.nlm.nih.gov/pubmed/15608200
http://dx.doi.org/10.1093/nar/gki038
work_keys_str_mv AT colejr theribosomaldatabaseprojectrdpiisequencesandtoolsforhighthroughputrrnaanalysis
AT chaib theribosomaldatabaseprojectrdpiisequencesandtoolsforhighthroughputrrnaanalysis
AT farrisrj theribosomaldatabaseprojectrdpiisequencesandtoolsforhighthroughputrrnaanalysis
AT wangq theribosomaldatabaseprojectrdpiisequencesandtoolsforhighthroughputrrnaanalysis
AT kulamsa theribosomaldatabaseprojectrdpiisequencesandtoolsforhighthroughputrrnaanalysis
AT mcgarrelldm theribosomaldatabaseprojectrdpiisequencesandtoolsforhighthroughputrrnaanalysis
AT garritygm theribosomaldatabaseprojectrdpiisequencesandtoolsforhighthroughputrrnaanalysis
AT tiedjejm theribosomaldatabaseprojectrdpiisequencesandtoolsforhighthroughputrrnaanalysis
AT colejr ribosomaldatabaseprojectrdpiisequencesandtoolsforhighthroughputrrnaanalysis
AT chaib ribosomaldatabaseprojectrdpiisequencesandtoolsforhighthroughputrrnaanalysis
AT farrisrj ribosomaldatabaseprojectrdpiisequencesandtoolsforhighthroughputrrnaanalysis
AT wangq ribosomaldatabaseprojectrdpiisequencesandtoolsforhighthroughputrrnaanalysis
AT kulamsa ribosomaldatabaseprojectrdpiisequencesandtoolsforhighthroughputrrnaanalysis
AT mcgarrelldm ribosomaldatabaseprojectrdpiisequencesandtoolsforhighthroughputrrnaanalysis
AT garritygm ribosomaldatabaseprojectrdpiisequencesandtoolsforhighthroughputrrnaanalysis
AT tiedjejm ribosomaldatabaseprojectrdpiisequencesandtoolsforhighthroughputrrnaanalysis

Ejemplares similares